Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00631 ATGAGAAGAGGATTCGGTCTACTCATTTCTCTCTGTAACCGTAACCCTCCGTTGGCGCCGCCACCCTCACTCCATTTTCGCGGCGTCGCCTTCTCCAGATCTCATCTTTCTCCCGCCACCACCGCCACCGCCATGCCTGGGGCTGACGCACTCGATTTGGAGTGGCCGGCCAATCGCGTCAGGGACGCTTTCATCAAGTTCTTCGAAGACAAGAGCCATGTCAACTGGAAGTCTAGCCCTGTCGTCCCTTTCAACGACCCAACCCTCCTTTTTGCCAACGCTGGTATGAACCAGTTCAAGCCAATCTTTTTGGGAACTGCAGACCCTAATACTGCCTTGAGCAAACTCTCTCGTGCTTGCAATACCCAAAAATGCATTCGAGCTGGTGGTAAACACAATGATCTTGACGATGTGGGAAAAGATACCTACCATCACACCTTCTTTGAGATGCTGGGAAATTGGTCGTTTGGGGATTACTTTAAAGTAGAAGCCATTAGCTGGGCATGGGAACTTCTAACAAAAGTTTATAAATTACCATCGGATCGCGTTTATGCCACATATTTTGGCGGTGATGAGAAGGCTGGTCTTGCCCCTGATCTTGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTTTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATAATGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTGCCTGCAAAGCATGTTGATACAGGCATGGGTTTTGAACGATTGACCTCTATACTACAGAACAAATTGAGCAATTATGACACTGATGTCTTCTTGCCTATCTTTGACGCTATTCAGCTGGTAACTGGTGCTAGGCCATATTCTGGGAAAGTCGGACAAGATGATGTAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTATCATTTGCCATTGCTGATGGGTCTCGACCTGGTAATGAGGGTCGTGAGTATGTTTTGAGGCGTATACTCCGTCGAGCTGTCCGGTATGGTCGTGAAGTGCTAAAAGCAAAAGAGGGTTTTTTCAATGGGCTTGTAAATGTTGTGGTGAATGTGATGGGTGATGTTTTCCCTGAGTTAAAACATCAAGAAGCACACATTAGGAGCGTAATTGCAGAGGAGGAGGAAAGTTTTGGGAGAACCTTAATTAAGGGGATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGATACTGAGCGGCGAGGAAGCATTTGTCTTGTGGGATACATATGGGTTCCCATTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGATTACTTGTTGATGTCGAAGGTTTTAATAAGGCTATGGAAGCTGCCAGAGAGAGATCAAGAAATGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACGTCAGCATTGCACAAAAGGGGCATTTCTCCAACTGATGATAGCTTCAAATATGTTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATACACTGGTTCTGAGTTTGTTGATTCAGTTAATACTGATGGTGATATTGGTGTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTCGATACTGGATCCCTTGAGTGTCAACATGCTTCATTTCAAGTTCGTAATGTTCAAGTTTATGGAGGTTTTGTTCTTCACATTGGTAATGGGACTGGTATCTCTGTTGGTGACAAAGTTTTTTGCAAGGTTGATTACGAAAGACGCGCCCTTATAGCCCCTAACCATACCTGCACGCACATGTTAAATTTTGCTCTTAGGGAAGTACTTGGCAATCATGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGATAATTTAAGGAGAATCGAATCAATTGTTAATGAGCAAATTAAAGCTGAGCTGGATGTAAATGCAAAGGAGGTAACTCTTGCTGAAGCCAAGCGTATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCGGTTAGAGTTGTGTCAGTTGGACAAAAAGTTGATTATCTCCTTGCTGACCCTGAGAATGAAAAATGGTTATCTATTTCATCGGAATTGTGTGGCGGTGAATATCATAGCTAA 2292 0.4385 MRRGFGLLISLCNRNPPLAPPPSLHFRGVAFSRSHLSPATTATAMPGADALDLEWPANRVRDAFIKFFEDKSHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWELLTKVYKLPSDRVYATYFGGDEKAGLAPDLEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKLSNYDTDVFLPIFDAIQLVTGARPYSGKVGQDDVDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVNVVVNVMGDVFPELKHQEAHIRSVIAEEEESFGRTLIKGIEKFETAVRHVQGKILSGEEAFVLWDTYGFPLDLTQLMAEEKGLLVDVEGFNKAMEAARERSRNAQTKQAGGAIVMDADATSALHKRGISPTDDSFKYVWFKDHESVVKAIYTGSEFVDSVNTDGDIGVVLESTSFYAEQGGQIFDTGSLECQHASFQVRNVQVYGGFVLHIGNGTGISVGDKVFCKVDYERRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVNAKEVTLAEAKRINGLRAVFGEVYPDPVRVVSVGQKVDYLLADPENEKWLSISSELCGGEYHS. 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00631 763 FunFam Alanine--tRNA ligase 529 625 - -
Seca6g00631 763 SUPERFAMILY ThrRS/AlaRS common domain 626 739 IPR018163 GO:0000166
Seca6g00631 763 FunFam Alanine--tRNA ligase, cytoplasmic 627 762 - -
Seca6g00631 763 Gene3D - 627 721 - -
Seca6g00631 763 Coils Coil 486 506 - -
Seca6g00631 763 FunFam Alanine--tRNA ligase, cytoplasmic 54 304 - -
Seca6g00631 763 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 508 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Seca6g00631 763 Pfam tRNA synthetases class II (A) 60 630 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Seca6g00631 763 SUPERFAMILY Class II aaRS and biotin synthetases 56 307 IPR045864 -
Seca6g00631 763 PRINTS Alanyl-tRNA synthetase signature 133 144 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 Hamap Alanine--tRNA ligase [alaS]. 55 763 IPR023033 GO:0004813
Seca6g00631 763 Gene3D Bira Bifunctional Protein; Domain 2 56 304 IPR045864 -
Seca6g00631 763 NCBIfam alanine--tRNA ligase 60 760 IPR002318 GO:0000166|GO:0005737
Seca6g00631 763 PANTHER ALANYL-TRNA SYNTHETASE 50 759 - -
Seca6g00631 763 CDD AlaRS_core 57 303 - -
Seca6g00631 763 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 55 763 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Seca6g00631 763 Gene3D - 533 626 - -
Seca6g00631 763 SUPERFAMILY Translation proteins 554 626 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00631 Seca-Chr6 19058781 19069825 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00631 K01872 - gmx:100788271 1338.55