Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00629 ATGGCGAAAGAGGGAAGTGACTTTGACGACGAAGTGAATGACACATTGGATTGTATGGAAGAAGAGCGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAACGCAGCAGAGGAAGAAGATGGGGAATATACTTTCAGATTCAAACATGGGATGAGCCCTTTGGACTTCGTCGATAATAATGATTCTGGTGTTCAAAGCTATCAACAATTCGAACGCCTTGAGTACGAAGCTCTTGCTCACAAAAAGCGAAAAGCACTTGAACAATGCCACCGTGAAGGAAATTCTTCTAAGAAGGCAAGGGAAGATGATATTTCTGGGGCAAGCATGGCTGAGATAATGGAAGTAATGAATTTTGGTGTGCGCAAGAGATCAAGAAAGACTAAAAAAAGAGGTAGGCGAAAAGGATCAAAGAATAAACTCAGCGCTAAGCTAACACAAATGCTGGGTGATGCCACACTTCACTATGCATGTGGCAATTACGACATGGCTATAGCTGTGTTGCATGAAGTTGTTAGGCTAGCACCAAATTTGCCTGACTCATATCACACCCTTGGACTTGTCTATAGTTCACTTAAGGATTACAAAAGAGCTATGGATTTTTACATGATTGCTGCTCATTTGACTCCGAAAGATCCATCTCTTTGGAAACTACTTTTTACATGGTCCATAGAACAAGGTGATATTGGCCAAGCGAGTTATTGTCTTTCAAAAGCAATAACAGCAGATCCCAAAGATAGTACGCTTAGAAGTCATCGCGCAATGCTTTATGTTGAACTTCAAGATTATCAAAAGGCTGCGGTTGCGTATGAGCAAATATATCAACTTTGTCGTGAAAATGTCAATGCACTAAAAGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATGTTCAGTTCGCATTCTTGAAGAGTATCTTAATCAACCAGATGAAGCAAATGCAAGTGTAGTTGATCTACTGGCTGCCGTATTGATGGAAACTAAGGCACATGACAAAGCTCTTAAGTATATTGAACATGCTCAAGTGGTAAATTCTGGAAAAGAATTGCCTTTGAATTTGAAAATTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAGATGGCTCAGGTTTTCTTTAATGATTTGAAACCAGAGAATGCAAGCGAGCATGCTGAATTGGTCACTGAGGTTGCGGACTCATTAATGGGTCTTGAACATTATAATTCTGCTTTGAATTATTATTTGACGTTGAAAGGAAATAGTGGAAACGAAAATGGTCTTCTGTATCTGAAAATTGCCAGATGTTATCTATCCCTGAAAGAAAGATTACAAGCAATTCTCTTTTTTTCCAAAGCCCTAGAAACATTACAAGATGATATTGATGCACGCATAACTTTGGCTTCCCTTCTGCTCGAAGAAGGGAAAGAAGATGAAGCCATTTCCTTGTTGTCTCCTCCAAAGGATTCTGAATCTGTTGAAGCACTTTCTGACAAGTCAAATAGATGGTGGCTTGATGTAAGAATAAAACTGAAACTCTGCAACATATATCGGAATAGAGGGATGCTTGATGACTTTGTTGATGCAATTTTCCCTTTGATACGTGAATCATTATATGTTGCAACTCTTAGACAAAAGGGTAAATCAAAAAAGCGCCTATCCAAAAGAGATCTGGTTGAAAGGGTTAGGGTACTGGGTGGTCAGGAAAAGGATAATGTCTTTCGAGGTTTCAGACCGATAGCAACACCATCTGATCTGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAAAAGAAGGCAATTCTGAAGGAGAAAAAAAAAGCTGAGGCATTGGCCTCTGGAATTGACTGGCTAAGTGATGATTCAGATGATGAGCCTCAGGAAGAAAACAAAGAAGCTCCCTTGTGTAATCTACTCAAAGATGAAGAACATCACCAGCTAATCATTGATTTGTGCAAGGCATTAGCATCATTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCACTTTAAGATTGGCTCATTCTTCTTTATCTGCTGAGAAGAAAGAGGAGCTTCGGTCTCTTGGAGCTCAAATGGCATACAACACCACAGATCCTAAACATGGATTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCGAGATTGGAAAACCGAGATACAAGACACTACAAGTTTGTACGTGTTATGCAAGGAAAATTTGTGGATTGTGTGCCTCCTATCCTCATTTCTGGGCATCAGTTTACCATATTTAGCCATCATCAAGATGCAGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCTGAGAATCCCTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTGGCATTGGGTTTCAGACTTCAAAATAAGCATCAGTGTGTTGTACAAGGATTAGCATTCCTCTACAATAATTTGAGGATCTGTGAGAACAGTCAGGAATCCTTGTACAACATAGCTCGGGCATACCAGCATGTTGGTCTAGTAACTCTGGCGGCTTTGTATTATGAGAAAGTGCTTGCTATTCGCGAGAGAGACTATCCAATTCCAAAACTTCCCAATGAGAATCCAGATGTCATGGAAAATCATAAACCTGGTTATTGCGACCTTCGCAGAGAGGCAGCGTACAATCTGCATTTAATTTACAAAAAGAGTGGAGCTCTTGATCTTGCTAGGCAAGTTCTAAAAGATCATTGTACTTTGTGA 2751 0.3973 MAKEGSDFDDEVNDTLDCMEEEREEEEEEEEEEENAAEEEDGEYTFRFKHGMSPLDFVDNNDSGVQSYQQFERLEYEALAHKKRKALEQCHREGNSSKKAREDDISGASMAEIMEVMNFGVRKRSRKTKKRGRRKGSKNKLSAKLTQMLGDATLHYACGNYDMAIAVLHEVVRLAPNLPDSYHTLGLVYSSLKDYKRAMDFYMIAAHLTPKDPSLWKLLFTWSIEQGDIGQASYCLSKAITADPKDSTLRSHRAMLYVELQDYQKAAVAYEQIYQLCRENVNALKAAAKFYKKCGQVECSVRILEEYLNQPDEANASVVDLLAAVLMETKAHDKALKYIEHAQVVNSGKELPLNLKIKAGICHVHLGNMEMAQVFFNDLKPENASEHAELVTEVADSLMGLEHYNSALNYYLTLKGNSGNENGLLYLKIARCYLSLKERLQAILFFSKALETLQDDIDARITLASLLLEEGKEDEAISLLSPPKDSESVEALSDKSNRWWLDVRIKLKLCNIYRNRGMLDDFVDAIFPLIRESLYVATLRQKGKSKKRLSKRDLVERVRVLGGQEKDNVFRGFRPIATPSDLLKASRAKKLLQKKAILKEKKKAEALASGIDWLSDDSDDEPQEENKEAPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINLTLRLAHSSLSAEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVMQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLRICENSQESLYNIARAYQHVGLVTLAALYYEKVLAIRERDYPIPKLPNENPDVMENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL. 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00629 916 MobiDBLite consensus disorder prediction 122 141 - -
Seca6g00629 916 MobiDBLite consensus disorder prediction 123 140 - -
Seca6g00629 916 Pfam Tetratricopeptide repeat 152 213 - -
Seca6g00629 916 Gene3D Tetratricopeptide repeat domain 352 534 IPR011990 GO:0005515
Seca6g00629 916 Gene3D Tetratricopeptide repeat domain 135 350 IPR011990 GO:0005515
Seca6g00629 916 SUPERFAMILY TPR-like 386 899 IPR011990 GO:0005515
Seca6g00629 916 FunFam General transcription factor 3C polypeptide 3 547 915 - -
Seca6g00629 916 MobiDBLite consensus disorder prediction 1 44 - -
Seca6g00629 916 SMART tpr_5 316 349 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 213 246 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 179 212 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 247 280 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 423 456 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 145 178 IPR019734 GO:0005515
Seca6g00629 916 SMART tpr_5 828 861 IPR019734 GO:0005515
Seca6g00629 916 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Seca6g00629 916 SUPERFAMILY TPR-like 359 478 IPR011990 GO:0005515
Seca6g00629 916 SUPERFAMILY TPR-like 152 345 IPR011990 GO:0005515
Seca6g00629 916 Gene3D Tetratricopeptide repeat domain 578 915 IPR011990 GO:0005515
Seca6g00629 916 Pfam Tetratricopeptide repeat 830 862 IPR019734 GO:0005515
Seca6g00629 916 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 19 916 IPR039340 GO:0006383
Seca6g00629 916 MobiDBLite consensus disorder prediction 10 40 - -
Seca6g00629 916 Coils Coil 9 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00629 Seca-Chr6 19008819 19023139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00629 K15201 - gmx:100804533 1447.18