Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00628 ATGCTTGTAGCTCGGAATCTCTCCCCTTCAAAGCTTAAGCCACTCTTTTATTTATCACTCATTTCTGAGTGCAGCAACCATGCCCAGTCAAATCTCTTTTCAATCTTAATTCCATACTCAAAAACCCATCTCCAAAGCTTTCCGAAATTTTTACCTCAACCATCAATTAATTTGTTTAGGTCTTTCTCTTCACAACCTGCAGATTCAACTTTGCAACAAAATTTGCTCCTCTCCCGTGAGGGTAATTATGATGAAGGCACTTCCCAATCTCTTCATGTCTGCCCTGGTTGTGGGGTTTATATGCAGGATTCAAACCCAAAAGAACCTGGTTATTTTATGAAACCCTCTGAGAAGGACCTAAATTATAGATTGTATACCCATCTTGAACCCGTTGCACAAGAGCCTGAGTTCTCCAATTCTGTTAAAAGGGGACTTGTTATTGAACCAGAAAAGCTTAATGGTGATGTGAACTTGATTAGGAAGCCAGAGAAGCCAGTGGTATGTGGACGCTGTCATTCGTTGAGGCACTATGGGAAGGTGAAGGATCCTACCGTGGAAAACTTGCTACCAGATTTTGACTTCGATCATACGGTGGGAAGGAAGTTGGCATCAACGACTGGGGCCCGTTCAGTGGTTCTTATGGTTGTGGATGTAGTCGATTTTGATGGGTCATTTCCAAGGAAGGTTGCAAAGTTGGTTTCCAAGACAATTGAGGATAATTCTGCTGCATGGAAAAAGGGTAAGTCAGGGAATGTGCCTAGGGTGGTACTTGTGGTAACAAAGATTGACTTATTGCCTAACTCATTGTCACCAACAAGACTGGAGCATTGGATTAGGCAAAGAGCAAGAGAGGGCGGGATTAATAAGATTACTAGTTTGCATATGGTGAGTGCCCTGAGAGATTGGGGACTGAAGAACCTTGTGGATGATATAATTGAATTGGCTGGACCTAGAGGTAATGTGTGGGCTGTTGGGGCACAGAATGCAGGAAAGAGTACTTTAATAAATTCTATAGGGAAGTATGTTGGAGGGAAGATTACACAGCTGACAGAAGCACCTGTGCCAGGGACAACACTGGGCATTGTTAGAGTTGAGGGTGTTCTTCCAAGTCAGGCAAAATTATTTGATACCCCCGGCCTTCTACATCCATACCAAATTACAACAAGGTTGGTAAGGGATGAGCAAAAACTTGTACACATGAGCAAGGAGTTGAAACCTAGAACATACAGAATCAAGGCTGGTCATTCAATTCACATCGCTGGTCTAATGAGATTGGATATAGAAGAAACGTCCCTGGATACTATTTATGTCACAGTGTGGGCCTCTCCTTATCTTCCTCTGCATATGGGTAAAGTAGAAAATGCATGTAAAATGTTCCAAGATCATTTTGGGCGCCAATTACAGCCTCCAATTGGGGAGAAACGAGTTCAGGAACTAGGGAATTGGGCGAGAAGGGAATTTCATGTTAGTGGGAACAGTTGGGACTCGAGTTCTGTAGACATAGCTGCTGCTGGCCTTGGTTGGTTTGCAATTGGACTTAAAGGAGATGCAGTGTTAGGTGTTTGGACTTACGAAGGGGTTGACGTTGTTCTTCGCAATTCTTTAATACCTTATAGATCATACACTTTTGAAGTTGCAGGATTTACAGTCTCCAAGATTGTCTCCCAGTCTGACAAAGCTTTAAATAAGTCACATCAACGAAATGACAAAAAGATGCACTCAAAAGCGCTATCCAGTTTTGTTGAATCATTACCATTGACTTCCAATGGAGGCATCTGA 1779 0.4261 MLVARNLSPSKLKPLFYLSLISECSNHAQSNLFSILIPYSKTHLQSFPKFLPQPSINLFRSFSSQPADSTLQQNLLLSREGNYDEGTSQSLHVCPGCGVYMQDSNPKEPGYFMKPSEKDLNYRLYTHLEPVAQEPEFSNSVKRGLVIEPEKLNGDVNLIRKPEKPVVCGRCHSLRHYGKVKDPTVENLLPDFDFDHTVGRKLASTTGARSVVLMVVDVVDFDGSFPRKVAKLVSKTIEDNSAAWKKGKSGNVPRVVLVVTKIDLLPNSLSPTRLEHWIRQRAREGGINKITSLHMVSALRDWGLKNLVDDIIELAGPRGNVWAVGAQNAGKSTLINSIGKYVGGKITQLTEAPVPGTTLGIVRVEGVLPSQAKLFDTPGLLHPYQITTRLVRDEQKLVHMSKELKPRTYRIKAGHSIHIAGLMRLDIEETSLDTIYVTVWASPYLPLHMGKVENACKMFQDHFGRQLQPPIGEKRVQELGNWARREFHVSGNSWDSSSVDIAAAGLGWFAIGLKGDAVLGVWTYEGVDVVLRNSLIPYRSYTFEVAGFTVSKIVSQSDKALNKSHQRNDKKMHSKALSSFVESLPLTSNGGI. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00628 592 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 54 573 - -
Seca6g00628 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 425 IPR027417 -
Seca6g00628 592 CDD YqeH 168 380 - -
Seca6g00628 592 Pfam 50S ribosome-binding GTPase 321 389 IPR006073 GO:0005525
Seca6g00628 592 Gene3D - 199 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00628 Seca-Chr6 18985599 18990195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00628 - - gmx:100787200 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00628 6 18985599 18990195 Seca6g00628 6 18985599 18990195 ECH