Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00599 ATGGCGACTCTGCAATTCACCTTCACTGACTCAACCACGTTGTGGAGGCCATCACTGCACTCTAAACCTTCTCATTCTCGAAATCGAAGCTTCGTCGTGAAAGCCGCTTCCCTTGAATTCTCCAGGACCAGGAGACGGTTCATCGCTGAGTCCACAGCAATATCGCTGTTAGTCCCTACTCAATTGGCCAAGTCCGAAGATGCGCTTTCTGAGTGGGAAAGAGTTTACCTCCCTATCGACCCTGGCGTTGTGCTTCTAGACATTGCTTTTGTCCCTGACGACCCCAACCATGGTTTTCTTTTGGGGACGAGGCAAACCATTTTGGAGACCAAAGATGGAGGAAACACTTGGGCCCCTCGTTCCATACCTTCTGCTGAAGATGAAGATTTTAACTACAGGTTTAATTCTATCAGTTTCAAAGGGAAAGAAGGGTGGATAGTTGGAAAACCTGCTATTCTATTGTACACTTCTGATGCTGGAGAGAGTTGGGAAAGGATACCACTTAGTGCTCAACTTCCTGGGGATATGGTGTACATAAAGGCAACTGGTGATAAGAGTGCAGAGATGGTGACTGACCAAGGTGCAATATATGTTACATCAAACAGAGGCTACAACTGGAGGGCTGCTGTTCAGGAAACGGTTTCAGCTACCCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACATTGGAACTTTCAATACTGTTAATCGCTCTCCGGATGGAAGGTATGTTGCAGTCTCAAGTCGTGGCAACTTCTACTTAACCTGGGAACCTGGTCAGGCATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTATGGCTTCTTGTTCGTGGAGGAGGTCTTTATCTCAGCAAAGGCACCGGGGTAATTAATTCTGAGATTATGATGCTAGTGTACCAATACAGACTAGCAGTCTTCCTTTTCACTCCTTTCCATGTTATTCTTGATAATCTTTTATCTCTTTTCTTAAGTATCAACTTTGCTATTAATATTGTCACCCTTCTTCTTTGGGACATTTTCTTCTCTATGCTGTACATTTGCAGACTACTTTACTTACTCTCCCTTATCTTGTTTGTTAATGAGGCAGCTTCTATCTTTGATCAAACATCTTTCTTTCCTACATTCTCTTTCCTTGTGCTGTCACAAATCCACATTGGTATGCCTATCTCCACTAAATTTATCATATTAATCGTCATTCCCATTTCAACCAACCTGAAATGTTTAGTTGCATCTTGTAGAAGTGGGGAGAAGTGGTAA 1308 0.4343 MATLQFTFTDSTTLWRPSLHSKPSHSRNRSFVVKAASLEFSRTRRRFIAESTAISLLVPTQLAKSEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGDKSAEMVTDQGAIYVTSNRGYNWRAAVQETVSATLNRTVSSGISGASYYIGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGVINSEIMMLVYQYRLAVFLFTPFHVILDNLLSLFLSINFAINIVTLLLWDIFFSMLYICRLLYLLSLILFVNEAASIFDQTSFFPTFSFLVLSQIHIGMPISTKFIILIVIPISTNLKCLVASCRSGEKW. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00599 435 Pfam Photosynthesis system II assembly factor YCF48 68 302 IPR028203 -
Seca6g00599 435 Gene3D - 134 310 IPR015943 GO:0005515
Seca6g00599 435 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 22 307 - -
Seca6g00599 435 Gene3D - 9 133 IPR015943 GO:0005515
Seca6g00599 435 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 71 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00599 Seca-Chr6 17767346 17770229 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00599 - - gmx:100810566 552.747