Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00590 ATGAGAGGCCTTCTGCAGAGCACAAAACTGTTTGGGAGCAAGTTGCTCCATGGAAGGAGGAGTGAATTGACACAATGCAATCGAGCATATAGCCTGATCCCAATGGTGATAGAGCACTCGTCCAGAGGAGAGAGAGCCTACGACATCTTCTCGCGCCTTCTCAAGGAGCGCATCGTTTGCATCAACGGTCCCATCTCCGACGACACCGCTCATGTCGTCGTCGCTCAGCTCCTCTTTCTCGAATCTGAAAACCCTTCCAAACCAATCCACATGTACCTCAACTCCCCTGGTGGCGCCGTCACCGCAGGTGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCAATTCACACAATCTGTTTGGGTCAAGCTGCATCCATGGGTTCTCTCTTATTAA 402 0.505 MRGLLQSTKLFGSKLLHGRRSELTQCNRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGGLQFMILCSTFGLQFTQSVWVKLHPWVLSY. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00590 133 SUPERFAMILY ClpP/crotonase 32 103 IPR029045 -
Seca6g00590 133 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 103 IPR023562 -
Seca6g00590 133 Pfam Clp protease 42 103 IPR023562 -
Seca6g00590 133 Gene3D - 31 113 - -
Seca6g00590 133 PRINTS Clp protease catalytic subunit P signature 48 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca6g00590 133 PRINTS Clp protease catalytic subunit P signature 88 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca6g00590 133 CDD S14_ClpP_2 48 103 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00590 Seca-Chr6 17592614 17595386 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00590 K01358 - egr:104454006 171.014