Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00581 ATGGAGGGAACGGCAACGGGATGTTACAAGTGCGGCAGACCAGGTCACTGGTCTCGTGACTGTCCTTTCTCTGCTCCCAATTCAAACCCTAACCCTAACACCACCGCCGCCACCAATCCCAATCCACCGTCCTCCTCTTCCTTCAAGCCTTCTGGACCCAGATCTGCCACCGAAAAACCCAAAAAGCTCCCCCGAACAAGGCCCAAACTCACTCCCGATCTCTTTCTCTCCGACGACGGCCTCGGTTACGTCCTTCGCTATTTCCCTCGCGCCTTCAAATACCATGGTCGCGGCCACGAGGTTCGTGATTTGGGTAACCTGCTTCAGTTGTACACCGAATGGCACTCTCGCTTGCTCCCTTATTACTCTTTCAATCAATTTGTTCACAAAGTTGAAAAAGTTGCTGCTACCAAGCGTGTAAAGACTTGCCTTAGAGAACTGAGAGAAAGAGTTGCAAGTGGTGGAGATCCAACAAAACTACGTGAACCACCAGCTGTGCATGACATTCCAGCTGATGAACAAGCATCTTTGCTAAATCCTTGGTGTTTTGCTGTCTCTGCAGGTGATGGGGAAGCAAGTCATCAAGAAAGAGATGTATTTGCAGAATCCCACAATGTTAATGACATTCAAGAAGACTTGCTTAATGATATATACGATAAAGCTACTGAAGAACCTTCTCAGGCCAATGACAATGTGAATGGCGCTAGTACAGCTTCCAAAATTAGTGAAATTGAAAAGACATCAAACGAAGTCCCAAATAATGGGGCCAGCCTGTCTGGCAAATCTGAGATAACAGAAGAGCAGAGAGCTCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGAGCTGCTAGAGCTGGCTTATCACAGGCCTCTTAA 882 0.4762 MEGTATGCYKCGRPGHWSRDCPFSAPNSNPNPNTTAATNPNPPSSSSFKPSGPRSATEKPKKLPRTRPKLTPDLFLSDDGLGYVLRYFPRAFKYHGRGHEVRDLGNLLQLYTEWHSRLLPYYSFNQFVHKVEKVAATKRVKTCLRELRERVASGGDPTKLREPPAVHDIPADEQASLLNPWCFAVSAGDGEASHQERDVFAESHNVNDIQEDLLNDIYDKATEEPSQANDNVNGASTASKISEIEKTSNEVPNNGASLSGKSEITEEQRARMEANRLKALERRAARAGLSQAS. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00581 293 SMART c2hcfinal6 7 23 IPR001878 GO:0003676|GO:0008270
Seca6g00581 293 MobiDBLite consensus disorder prediction 223 263 - -
Seca6g00581 293 Pfam Zinc knuckle 7 22 IPR001878 GO:0003676|GO:0008270
Seca6g00581 293 MobiDBLite consensus disorder prediction 223 293 - -
Seca6g00581 293 MobiDBLite consensus disorder prediction 264 283 - -
Seca6g00581 293 ProSiteProfiles Zinc finger CCHC-type profile. 8 22 IPR001878 GO:0003676|GO:0008270
Seca6g00581 293 PANTHER TIMELESS INTERACTING-RELATED 3 287 IPR040038 GO:0000076
Seca6g00581 293 MobiDBLite consensus disorder prediction 22 53 - -
Seca6g00581 293 Pfam Replication Fork Protection Component Swi3 69 150 IPR012923 GO:0005634|GO:0006974|GO:0031297
Seca6g00581 293 SUPERFAMILY Retrovirus zinc finger-like domains 6 24 IPR036875 GO:0003676|GO:0008270
Seca6g00581 293 MobiDBLite consensus disorder prediction 1 71 - -
Seca6g00581 293 Gene3D - 4 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00581 Seca-Chr6 17380351 17384374 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00581 K10998 - gmx:100808422 385.185