Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00574 ATGGTGCCACCGGCGGTTCAATCGCCGAACCCGCAAGTGACGCAGCAGTTCTTGAGCTCCGTCCTCTCTCAGCGCGGTCCATCGGCGGTTCCGTACTCAGAGGACACCAAGTGGCTGATCCGGCAACACCTGGTGGCCCTAACCACCGCGTTCCCTTCCCTTGAACCCAAAACGGCGACGTTTACCCACAACGATGGTCGTTCCGTGAACCTCCTCCAAGCCGAAGGAACCATCCCCATGACCTACCAAGGCGTCACCTATAACATCCCCGTCGTTATTTGGCTCATGGAGTCTTACCCTCGCCACCCACCTTGCGTCTATGTTAACCCCACAAGGGACATGATCATCAAACGCCCTCACCCTCACGTTAACCCTTCTGGTTTAGTCTCTGTCCCTTACTTGCATAATTGGATCTACCCTAGTTCCAATTTGGTCGATCTTGTTCTCTCTTTGGGCCTTATCTTTGGCCGTGACCCTCCCCTTTATTCCCAACGCAGACCTAATCCCAATCCCAATCCAAATTTTGCAACTTCTTCATCAAATTTGTCTTCTTCTTCATCTGGGTATCCCCACCACCACCCTCACCCTCCTCCCAGGTCTTACCCTCCTTCGCCTTATGCTTCTATGGGTTCCCCTTCTCCTTCTCCTTCTCCTTCTCGGATTCCTCATACTGAGGACCCCACTGAGGTGTTCAAGAGGAATGCCATTAACAAGCTTGTGGAGATGGTGCATAATGATGTTGCTGGGTTGAGGAAAACGAGGGAGGCTGAAATGGAAGGGTTGTTTAGTTTGCAAGGGGTGTTGAAGCAGAGGGAGGAGCAGCTGAATAAGGGTGTGAAGGAAATGCAGGAGGAGATGGAAGGTTTGGAGCAGCAACTGCAGATGGTTTTGATGAATTCTGATGTTTTGGAAGGTTGGTTGAGGGATAACCAAGGGAAGAAATTGGGGGGTTTGGAGAATGCTGAGGATGCTTTTGAGTGTGTGGATGTGCTTTCAAAACAGATGCTTGAGTGCACTGCCTCTGATTTGGCCATTGAAGATACTCTCTATGCGTTGGATAAGGCAGTTCAGGTGGGGGCTATACCATTTGATCAGTACTTGAGGAGTGTGAGGGCACTGTCTAGGGAACAATTCTTTCACAGAGCTACGGCTGCTAAAGTTAGGGCTGCTCAGTTGCAGGCTCAGGTTGCTAGTATGGCTGTTAGGTATGGTAGCTGA 1218 0.5074 MVPPAVQSPNPQVTQQFLSSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTATFTHNDGRSVNLLQAEGTIPMTYQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLHNWIYPSSNLVDLVLSLGLIFGRDPPLYSQRRPNPNPNPNFATSSSNLSSSSSGYPHHHPHPPPRSYPPSPYASMGSPSPSPSPSRIPHTEDPTEVFKRNAINKLVEMVHNDVAGLRKTREAEMEGLFSLQGVLKQREEQLNKGVKEMQEEMEGLEQQLQMVLMNSDVLEGWLRDNQGKKLGGLENAEDAFECVDVLSKQMLECTASDLAIEDTLYALDKAVQVGAIPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVASMAVRYGS. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00574 405 ProSiteProfiles UEV domain profile. 21 165 IPR008883 GO:0015031|GO:0036211
Seca6g00574 405 ProSiteProfiles Steadiness box (SB) domain profile. 329 397 IPR017916 -
Seca6g00574 405 MobiDBLite consensus disorder prediction 162 225 - -
Seca6g00574 405 Pfam Vps23 core domain 324 386 IPR017916 -
Seca6g00574 405 MobiDBLite consensus disorder prediction 191 221 - -
Seca6g00574 405 SUPERFAMILY Endosomal sorting complex assembly domain 329 389 IPR037202 -
Seca6g00574 405 Pfam UEV domain 41 161 IPR008883 GO:0015031|GO:0036211
Seca6g00574 405 Gene3D - 330 390 - -
Seca6g00574 405 MobiDBLite consensus disorder prediction 168 190 - -
Seca6g00574 405 SUPERFAMILY UBC-like 24 161 IPR016135 -
Seca6g00574 405 Coils Coil 272 299 - -
Seca6g00574 405 Gene3D Ubiquitin Conjugating Enzyme 5 162 IPR016135 -
Seca6g00574 405 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 10 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00574 Seca-Chr6 16956475 16957692 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00574 K12183 - gmx:100798165 593.193