Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00522 ATGGAGAGTGGTTCAGGTTCAGGCAGCAATATTATGAAGAGTAGTACTGGTGGAAAGGGAGAGGTTCTAGACGGTTCCAATATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAGTTTCGTGGACCATAAGTTTCAAGAGTTGGATAGAGACAGAGATGGAAAGCTCTCTGTGAAAGAGCTTCAACCTGCTGTTTCTGATATCGGTGCTGCTCTCGGTTTACCTGCTCACGGCTCTAACCCTGATTCTGATCACATCTATTCTGAGGTGTTGAATGAATTCACACATGGGAAGCAAGAAAAAGTGAGCAAGAGTGAGTTCAAAGAGGTTCTGTCAGACATTCTATTGGGCATGGCTGCTGGATTGAAGAGAGACCCAATTGTGATACTTCGCATTGATGGTGAAGATCTCCTTGAGTTTGTTAATGGTTCAAGCTATGAAGCAGAAATGGCATCCTTATTCTCTCAGATTGAATCCCCTCAAAGATCACTTCATGACCATGTAATTCAAGCTCTGGCAAAACTCACTGTTGATCAAGGGATTCCTCCTACATCAGATTCTTGGGTATTTACCAACATTGTGGAACCAGCACTGCTATTTCAAGATGGGTCTGATTTGGATAAGCCTGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGAAAGTGGCAATGAGTGTGGCTAATCATCTTAAGGAGAAACCTGTCATAGTTGCTCATAGTGAAAACACCTTTGATGGAAGTGGTGTTAAGAGACTGTTATCCAACAAGTTTGAATTAGACAAGACTTTGAACTCAGCTATAGAGAATTTGCCAAAAGATCGAAATGGGAAATTGTCAAAGGAATATCTAAGGGTGGCACTGGATGTGGTGGCTCCATCTGCTGGTTTACCTCCAGTTGGTGCTGTTGAAGAGGTATTCAGCTTCAGTTTCTTAGTTAATCCATGTCTTCTATCTACTCTTTCCTTGTTTTAA 975 0.4154 MESGSGSGSNIMKSSTGGKGEVLDGSNIMELVGNEQVFSSFVDHKFQELDRDRDGKLSVKELQPAVSDIGAALGLPAHGSNPDSDHIYSEVLNEFTHGKQEKVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSSYEAEMASLFSQIESPQRSLHDHVIQALAKLTVDQGIPPTSDSWVFTNIVEPALLFQDGSDLDKPVSQETFLEEFKKVAMSVANHLKEKPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSAIENLPKDRNGKLSKEYLRVALDVVAPSAGLPPVGAVEEVFSFSFLVNPCLLSTLSLF. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00522 324 SUPERFAMILY EF-hand 44 290 IPR011992 -
Seca6g00522 324 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Seca6g00522 324 ProSiteProfiles EF-hand calcium-binding domain profile. 259 294 IPR002048 GO:0005509
Seca6g00522 324 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 21 131 - -
Seca6g00522 324 Gene3D - 21 123 - -
Seca6g00522 324 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Seca6g00522 324 SMART efh_1 41 69 IPR002048 GO:0005509
Seca6g00522 324 SMART efh_1 263 291 IPR002048 GO:0005509
Seca6g00522 324 Pfam EF-hand domain pair 45 111 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00522 Seca-Chr6 15742944 15747128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00522 21 306 EF-hand Containing Proteins AT4G38810 67.820 2.78e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00522 - - gmx:100820516 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00522 6 15742944 15747128 Seca6g00522 6 15742944 15747128 ECH