Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00520 ATGGGGAGTGTTTCGTCTGAAGAAGGTTCTGACCGTTGCGGGAGCTATAGTATTAGTGCTGACGTCAGCGAATCGGAGAGTTGCAGCAGCTTCTGCGGCCGCCGTTTCGACGCCGAGGGAGCCTCCAGCTCCGCTAATCTCTCGCCGCGTCCCTTCAACTTCCCGGCGGCGCAGGTAATGCTGCCTGTAATTGGCGGCAAGGACGTCGTCGTTTGGGATCACAAGCGTGACAACCTTGATTTGTCCGAAGTGGAAATGATGAAGGAGAGGTTCGCTAAGCTGCTTCTAGGAGAAGACATGTCTGGTGGAGGAAAAGGGGTTTGCACTGCGCTTGCGATCTCTAACGCAATCACAAATCTCTCTGCAACTGTGTTTGGTGAGCTGTGGAGGTTGGAGCCGCTGGCACCACAGAGGAAGGCAATGTGGCGTAGGGAAATGGAATGGCTGCTTTGCGTGAGTGATTCTATTGTGGAGCTTGTGCCATCCGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAAGTGATGGCCACACGTCCTCGTTCTGATTTGTACATCAATCTTCCGGCTTTGAAGAAGCTTGATGGGATGCTGATTAGTATGCTGGATGGCTTTCATGATACACAGTTTTGGTATGTTGACCGGGGGATTATATTGGGTGATTCCAAGGAATGTGATGATTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCACCAGATGGCTTGTCCGAGGATGATAGGAAAAGGTTGCAGCAGTGTAGGGATTGTACCAACCAGATATTAAAGGCTGCCATGGCGATCAATAGTTCTGTTCTTGCTGAAATGGAAATCCCTCGCGCCTATGTTGAATCCTTGCCCAGGACTGGAAAAGCTTGTCTAGGGGATATGATCTATCGATACATAACTGCTGACCAGTTCTCGCCTGAATGTCTCCTTGATTACCTCGATCTTTCTTCAGAGCACCAAACTCTGGGTATAGCTAATAAAATTGAGGCTGCTGTGCATGTATGGAGGCTGAAGGACCATAAGAAACATATAAATTCAGTGAAAGCCAGACAGTCTTGGGGTGGAAAAGTGAAGGGCCTTGTTGTTGATGGTGAAAAGAATCATCTTCTTGCCCAACGGGCAGAGACACTTCTACAAAGCTTGAAACACCGGTTTCCAGGGCTCCCTCAGACAGCACTAGATATGGCCAAGATACAATATAACAAGGATGTAGGACAGTCTATTCTTGAAAGTTATTCAAGGGTGTTGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTTTATGTAGATGATACTATAAAACGATGTGCAGCTGCAGATTCTATGCCTCTGTTCAGCAGAGGAGGTTTTGGAGGTATGCCCATCCAGAAGCGAATGTCTCCAAGCCCCTTCTCAATTCAACACACCCCTTATGCCTCTCCATTTGCAACCCCCACGTTCTGTTCCTCCTCTCCTGTTACTGGGAGCCCTTGCAGTCCACGGAGGACACATGCTGTGAAGAGGAATACTCAGGCAACAGATTCAAAGGCCGAAAAGTTGGCCGCAGCTGATTTTGAGAGGGTATGGTCATACACAGGAAACCTCAGTTCAAGAAGAGCTTCTGGTGATGCTCCGGAAAGAGATTGA 1668 0.4886 MGSVSSEEGSDRCGSYSISADVSESESCSSFCGRRFDAEGASSSANLSPRPFNFPAAQVMLPVIGGKDVVVWDHKRDNLDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQRKAMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLISMLDGFHDTQFWYVDRGIILGDSKECDDYGRPSVRQEEKWWLPSPKLPPDGLSEDDRKRLQQCRDCTNQILKAAMAINSSVLAEMEIPRAYVESLPRTGKACLGDMIYRYITADQFSPECLLDYLDLSSEHQTLGIANKIEAAVHVWRLKDHKKHINSVKARQSWGGKVKGLVVDGEKNHLLAQRAETLLQSLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVLESLAFNIMARIDDVLYVDDTIKRCAAADSMPLFSRGGFGGMPIQKRMSPSPFSIQHTPYASPFATPTFCSSSPVTGSPCSPRRTHAVKRNTQATDSKAEKLAAADFERVWSYTGNLSSRRASGDAPERD. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00520 555 FunFam Rop guanine nucleotide exchange factor 14 316 453 - -
Seca6g00520 555 Gene3D PRONE domain, subdomain 1 74 315 - -
Seca6g00520 555 Gene3D PRONE domain, subdomain 1 316 453 - -
Seca6g00520 555 ProSiteProfiles PRONE domain profile. 74 454 IPR005512 GO:0005085
Seca6g00520 555 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 49 495 IPR038937 GO:0005085
Seca6g00520 555 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 82 448 IPR005512 GO:0005085
Seca6g00520 555 MobiDBLite consensus disorder prediction 500 524 - -
Seca6g00520 555 FunFam Rop guanine nucleotide exchange factor 1 75 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00520 Seca-Chr6 15640855 15644786 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00520 - - gmx:100789706 989.178