Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00513 ATGGGAGAAGTGGCTGCTGAAGCTGAATATTTGAGATCAGAAAAAGCTCTGTTGCACTACTCAGATGCTACCTTCAAACCCCCACTTTCTCCTCTGTTCATACACATTCATCCATCATCAGAAGATTATACTACCAGTACCTCTGAATCTGATCTTGATCTCTCAGGCCAGCAACAGCAGAATATTCAACATCCCAAAGATGAATGGCTTCCTATCACTGAATCCAGAAATGGGAATGCATACCGTGCAGCCTTCCATATTCTTAATTCTAATATTGGATTTCAAGCTCTAATGCTTCCGGTTGCCTTTGCCACTCTTGGTTGGGCATGGGGTACAGTATGTTTGTCACTAGTCTTTGTTTGGCAGCTGTACACCATACTTCTCCTTATTCAACTTCATGAATCTCTCCCTGGAATTCGCCACAGCAGATATCTCTTCCTTGCCATGGCTGCCTTCGGTGGAAAATTAGGAAAGGTAGCTGCATTATTTCCGGTAATGTACCTCTCAGGAGGTAGCTGTGTTCTGTTTATCATCACCGGTGGTGGGACCTTGAGGCTACTATTCAAGACACTTTGTGAAAACGATTATGGGCATACGTGTGACGCACACTCACTTAGCGGTGTTGAGTGGTTTTTGGTGTTTACGTGCGTGGCCATTCTCATAGCTCAATTGCCCAACCTTAATTCAATGGCTGCTGTCTCTTTTGTGGGTGCCATCACTTCCATTAGTTATTGCACCCTCTTTTGGGCTCTCTCTGTTAAGAAGGGTAGGCCCCTCAATGTGTCCTACACTCCATCCATCTCCTCTCAAGACTCCAAAGTTGCTAAAATTAGTGACATTCTTAATGCCATTGGAATCATTGTGTTTGCTTTTAGAGGTCACAATCTTTTGCTAGAGATACAGGGGACATTGCCTTCAAATTTCAAAGAAACATCCAAAGTACCAATGCGTAGAGGAGTGACAATTTCATATGTACTCATTGCCATGTGTGTGTTCCCCCTCGCAATTGCCGGATTCTGGGCTTACGGAAACCAGGCAAGCATTACTCCTAACACAATTACTTCAATCATACCTTCAAATGGAGGGTTGTTATCTGCTTTTCCACAATTCCATAGGAAGCAAGTGTCAAAATTCTCAATGGGTGCAATGTATCTTCTAGTAATAATACATTGTTTGAGCAGCTTCCAAGTCTATGCCATGCCTGTTTTTGACAACTTGGAACTAAGATACACAAGCATTAAGAATAAGAGATGTCCTCGATGGGTCAGAACATGTTTTCGCCTATTCTTTGGAGGGTTGACATTCTTTATAGCGGTCACTTTCCCTTTTCTTCCAAGCCTATCAGCCTTGCTTGGAGGGATGACTCTGGTCCCACTCACATATGCATACCCTTGTTTCATGTGGTTAGCCATCAAGAAACCTCGCACAAAGGGTGTAGTTTGGTGCTTCAACCTTGCACTTGGATGCTTAGGGATGCTTCTAAGCGTTCTTTTGGTGGCTGCGGCTATACGGACTCTAGCTGACAAAGGTCTAAAAGCTAACTTCTTCAAACCATAG 1557 0.4355 MGEVAAEAEYLRSEKALLHYSDATFKPPLSPLFIHIHPSSEDYTTSTSESDLDLSGQQQQNIQHPKDEWLPITESRNGNAYRAAFHILNSNIGFQALMLPVAFATLGWAWGTVCLSLVFVWQLYTILLLIQLHESLPGIRHSRYLFLAMAAFGGKLGKVAALFPVMYLSGGSCVLFIITGGGTLRLLFKTLCENDYGHTCDAHSLSGVEWFLVFTCVAILIAQLPNLNSMAAVSFVGAITSISYCTLFWALSVKKGRPLNVSYTPSISSQDSKVAKISDILNAIGIIVFAFRGHNLLLEIQGTLPSNFKETSKVPMRRGVTISYVLIAMCVFPLAIAGFWAYGNQASITPNTITSIIPSNGGLLSAFPQFHRKQVSKFSMGAMYLLVIIHCLSSFQVYAMPVFDNLELRYTSIKNKRCPRWVRTCFRLFFGGLTFFIAVTFPFLPSLSALLGGMTLVPLTYAYPCFMWLAIKKPRTKGVVWCFNLALGCLGMLLSVLLVAAAIRTLADKGLKANFFKP. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00513 518 PANTHER OS05G0424000 PROTEIN-RELATED 80 501 - -
Seca6g00513 518 Pfam Transmembrane amino acid transporter protein 77 503 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00513 Seca-Chr6 15397727 15403236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00513 12 518 Organic Solute Cotransporters AT1G47670 47.937 1.37e-158 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00513 K26385 - gmx:100793408 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00513 6 15397727 15403236 Seca6g00513 6 15397727 15403236 ECH