Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00500 ATGCAGATCCAAGCCGTTGTCAAGAAGTATGACATTCTTTTTATTGCGGATGAGGTGATCTGTGCCTTTGGTAGACTTGGGGCAATGTTTGGATGTGACTTGTACAACATTAAACCAGACCTTGTTTCCTTGGCAAAGGCACTTTCATCCGCATATATGCCAATTGGAGCTGTCCTTGTGAGCCCAGAAATTACCGAAGTTATATACTCACAAAGCAACAAACTTGGTTCATTTTCTCATGGGTTTACTTATTCTGGACACCCTGTATCCTGTGCCGTTGCAATTGAAGCACTCAAGATCTACAAGGAAAGAAATATTGTTGATGTAGTGAACAAAATCTCCCCAAGGTTCCAAGATGGCATAAAAGCTTTTTCTGATAGTCCCATCATTGGAGAGATCCGAGGAACTGGCTTGATTCTGGGGACTGAGTTCACAGACAACAAATCACCAAATGATCCATTTCCTCCTGAATGGGGCAAGTTCAATACTCATTTTTCACCTATCCTTTTACCCGTTTAA 519 0.4162 MQIQAVVKKYDILFIADEVICAFGRLGAMFGCDLYNIKPDLVSLAKALSSAYMPIGAVLVSPEITEVIYSQSNKLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVDVVNKISPRFQDGIKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGKFNTHFSPILLPV. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00500 172 Gene3D - 2 106 IPR015421 GO:0003824
Seca6g00500 172 SUPERFAMILY PLP-dependent transferases 3 154 IPR015424 -
Seca6g00500 172 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 2 149 - -
Seca6g00500 172 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 14 51 IPR005814 GO:0008483|GO:0030170
Seca6g00500 172 Pfam Aminotransferase class-III 3 150 IPR005814 GO:0008483|GO:0030170
Seca6g00500 172 FunFam Gamma-aminobutyrate transaminase POP2 mitochondrial 19 73 - -
Seca6g00500 172 Gene3D Aspartate Aminotransferase, domain 1 107 159 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00500 Seca-Chr6 14928525 14929474 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00500 K16871 - gmx:100815181 301.212