Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00488 ATGGCTACCAATACCATTCATGGGAACACTGAAACTGCTCAACCCAACATTGTTCCACCAAAGCAGCCTCTTCCCCCTGCTAAGACCGTTGATTCTCAGTCTGTTCTCAGAAGGTTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGTATATCTGCCTTTCCTGAGGAAGATAACATATTCTTTTGGAAAGGAACAATAACAGGAAGCAAAGATACGGTTTTTGAAGGCACAGAGTACAAGTTATCTCTTTCCTTTCCCAATGATTACCCTTTTAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCATCCCAATGTGGATGTGCATGGCAACATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCCTATGATGTCAGAACAATTCTACTATCCATCCAAAGTCTGCTTGGAGAGCCAAATATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATATAGGAAGATGGTGGAGAAGTTGTACAAACCTCCAAGTGCTTAG 540 0.4185 MATNTIHGNTETAQPNIVPPKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKPPSA. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00488 179 SMART ubc_7 37 179 - -
Seca6g00488 179 CDD UBCc 37 174 IPR000608 -
Seca6g00488 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 171 - -
Seca6g00488 179 MobiDBLite consensus disorder prediction 1 31 - -
Seca6g00488 179 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g00488 179 SUPERFAMILY UBC-like 32 173 IPR016135 -
Seca6g00488 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 107 122 IPR023313 -
Seca6g00488 179 Pfam Ubiquitin-conjugating enzyme 38 172 IPR000608 -
Seca6g00488 179 Gene3D Ubiquitin Conjugating Enzyme 28 176 IPR016135 -
Seca6g00488 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 34 179 IPR000608 -
Seca6g00488 179 FunFam ubiquitin-conjugating enzyme E2 20 28 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00488 Seca-Chr6 14445507 14447711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00488 36 143 Miscellaneous Gene Families AT3G17000 31.858 1.35e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00488 K06688 - gmx:100305664 335.88