Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00487 ATGGGGAGAGTGGTAGTGGGCGTGGCGGTGAGTGTGGCGGCGGTGGCATGTGCGGTGGCGGCGGTGGCGGTGGGGAGAAGAATGAGGAGCAGGAGGAAGTGGAAGAAGGTGGTTGGAGTGTTGAGGGAACTTGAGGAAGCGTGTGACACGAGGGTTGGGAGGTTGAGGCAAGTGGTGGATACAATGGCTGTGGAAATGCACGCTGGGTTAGCATCAGAAGGTGGTTCCAAGCTCAAAATGCTTCTCACTCATATTCATAATCTCCCTAATGGGACTGAGAAAGGAACGTATTATGCACTAGATCTTGGAGGTACATATTTTAGGATTTTGCGGGTTCACTTTCCTGGTCATCAATCTTCTGTGTTGGAACATGAAGTTGAGCGACTTACCATTCCCCAACATCTAATGACTAGCACAAGCAAGGATCTATTTGATTTCATTGCTTCTTCATTAAAGGAATTCATTGAGAAAGAAAGAGATGGTTCTGAGCTTTCACTGAACAGAAGCAGGGAACTTGGATTTACATTTCCTTTCCCTGTGAAACAAATGTCTGCTTCCTCTGGCATTTTAATAAAATGGACGAAAGGATTTTCCATTGTAGATATGGTAGGAATAGATGTTCCTGCATGTTTGCAGGAAGCATTGACACGAAAAGGACTAGACATGCGGGTTGCTGCCTTGGTAAGGAAGTACTTCCTTTGTCCCAAGGTTAATGATACTGTTGGAACATTAGCTCTCGGACATTATCATGATGCAGATACTGTTGCTGCGATAATAATTGGCACTGGTACTAATGCCTGCTATTTAGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAACATCAGGATGCATGGTTGTGAATATGGAATGGGGAAACTTTTGGTCATCTCACTTACCAAGAACATTGTATGATATTGATCTAGATGCTGAAAGCCCTAATCCTAATGATCAGGGATTCGAGAAAATGATATCTGGAATGTATCTTGGTGACATCGTGAGGAGAGTCATTCTCAAGATGTCACTAGAGTCAGACATGTTTGGACCTATTTCTTCCAAGCTTTCAATGCCTTTTATACTAAGGACTCCTTTGATGGCTGCCATGCATGAGGATGATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAAAGACATCCTTGAGATACCTGAAGTTCCTTTGAAGGTGAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGTAGAGCTGCTCGATTGGCAGCTGCTGGTATTGTTGGTATCTTGAAGAAGATTGGTAGGGATGGGAGTGGTGATAAGAAAATGAAGAGAACAGTTGTGGCAATTGAAGGAGGTTTATATTCTAGCTATACATTGTTTAGGGAATACTTGCATGAAGCTTTGAACGAAATATTAGGGGAAGATATTGCTAAGCATGTGATTCTTAAGGTCACTGAAGATGGATCAGGCATTGGAACAGCACTGCTTGCTGCCTCTCATTCATCCTACAATGTGGATAAAGTACAGCTGCTATAG 1527 0.4335 MGRVVVGVAVSVAAVACAVAAVAVGRRMRSRRKWKKVVGVLRELEEACDTRVGRLRQVVDTMAVEMHAGLASEGGSKLKMLLTHIHNLPNGTEKGTYYALDLGGTYFRILRVHFPGHQSSVLEHEVERLTIPQHLMTSTSKDLFDFIASSLKEFIEKERDGSELSLNRSRELGFTFPFPVKQMSASSGILIKWTKGFSIVDMVGIDVPACLQEALTRKGLDMRVAALVRKYFLCPKVNDTVGTLALGHYHDADTVAAIIIGTGTNACYLERVDAIIKCQGLLTTSGCMVVNMEWGNFWSSHLPRTLYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILKMSLESDMFGPISSKLSMPFILRTPLMAAMHEDDSPDLREVARILKDILEIPEVPLKVRKVVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGDKKMKRTVVAIEGGLYSSYTLFREYLHEALNEILGEDIAKHVILKVTEDGSGIGTALLAASHSSYNVDKVQLL. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00487 508 Gene3D - 83 494 - -
Seca6g00487 508 SUPERFAMILY Actin-like ATPase domain 253 499 IPR043129 -
Seca6g00487 508 Gene3D - 61 483 - -
Seca6g00487 508 PANTHER HEXOKINASE 10 498 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Seca6g00487 508 Pfam Hexokinase 41 249 IPR022672 GO:0005524|GO:0005975|GO:0016773
Seca6g00487 508 FunFam Phosphotransferase 83 260 - -
Seca6g00487 508 PRINTS Hexokinase family signature 321 343 - -
Seca6g00487 508 PRINTS Hexokinase family signature 403 425 - -
Seca6g00487 508 PRINTS Hexokinase family signature 172 197 - -
Seca6g00487 508 PRINTS Hexokinase family signature 480 496 - -
Seca6g00487 508 PRINTS Hexokinase family signature 98 114 - -
Seca6g00487 508 PRINTS Hexokinase family signature 256 270 - -
Seca6g00487 508 ProSiteProfiles Hexokinase domain profile. 35 495 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Seca6g00487 508 Pfam Hexokinase 256 495 IPR022673 GO:0005524|GO:0005975|GO:0016773
Seca6g00487 508 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Seca6g00487 508 FunFam Phosphotransferase 238 483 - -
Seca6g00487 508 CDD NBD_sugar-kinase_HSP70_actin 99 270 - -
Seca6g00487 508 SUPERFAMILY Actin-like ATPase domain 24 251 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00487 Seca-Chr6 14429328 14434446 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00487 K00844 - gmx:100813589 796.578