Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00462 ATGGAGGAAGTTTGCGAAGGCAAAGACTTCGCTTTCCCGAAGCAGGAGGAGAACATTCTAGATTTCTGGTCTCAAATCGACGCATTCCACACTCAGTTAGCACTCACTGAGAACAAGCCTGAATACATCTTCTACGATGGCCCTCCCTTCGCCACCGGTCTCCCTCACTACGGCCACATCCTCGCCGGCACCATCAAGGACATCGTCACTCGCTACCACACCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTCCCCGTCGAGAACGAGATCGACAAGAAGCTCGGAATCAAGAAGCGAGAGGATGTCCTCAAAATGGGAATCGGTACCTACAACGAGGAGTGCAGGAGCATCGTCACGCGCTACGTCGAAGAGTGGGAGACCATCATCACACGCACTGGCCGCTGGATCGACTTCAAAAACGATTACAAGACCATGGACCTCAAGTTCATGGAGTCCGTTTGGTGGGTCTTTGCACAGCTTTATGCCAAAAACCTTGTCTATAAAGGTTTTAAGGTTATGCCTTATAGCACCGGCTGCAAAACTCCACTCTCTAATTTTGAAGCTGGTCAAAATTACAAGGATGTATCTGATCCTGAAGTGTATATGACATTTCCGGTCGTGGGTGATCCACATGGTGCATCTTTTGTAGCTTGGACAACAACTCCATGGACTCTTCCTAGTAATCTTGCTCTCTGTGTCAATGCTAATTTTACCTATTTGAAGGTACGTAATAAGTATTCGGGTAAAGTTTATGTTGTTGCTGAATCTCGTCTGTCCGTACTCCATAATCCTAAAGAGAAACCCAAAGAGGCTGTTGCTAATAGTTCAGCTGGCGGCCCTAAAATTACAATTGCAAAGAGCAAGGGTTCTTCAGGTGGAAAGACAGAAAATGTGTTAGATTCTTTTGAAGTGCTGGAGAAATTCTCAGGGGCTTCATTAGTGGGGAAGAAGTATGAACCATTATTTGATTACTTTGCAGAGTTATCTGATACGGCTTTTAGAGTTGTTTCCGACAATTATGTTACCGATGATAGCGGTACTGGCATTGTCCATTGTGCCCCTGCTTTTGGTGAAGACGATTTCCGTGTTTGCATTGATAATCAAATTCTTAGCAAGGATAATCTAACTGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATCACCGACTTTAGTGGGTGCTATATCAAACATGCTGACAAGGATATCATTGAAGCAGTGAAGGCAAAGGGAAGGCTGGTTAAATCAGGAGCTTTTACACATTCGTATCCATACTGCTGGAGATCTGATACCCCTCTCATTTACAGAGCTGTTCCAAGCTGGTTTGTCAGAGTGGAGTTGTTGAAAGAGCAATTGTTGGAAAACAATAAGCAGACCTACTGGGTCCCTGACTTTGTCAAGGATAAGCGATTTCACAATTGGCTGGAAAATGCAAGAGACTGGGCAATTAGTCGCAGTAGATTTTGGGGGACCCCTCTCCCTATATGGATTAGTGAGGATGAGAAAGAAATAGTTGTCATAGATTCTGTTGCAAAACTTGAAAAGCTTTCAGGTGAAAAGGTGTCTGACCTTCATCGGCACAATATTGATCATATTACAATTCAAACTGAAAGTGGCCGTGTGCTTCGACGTGTTGATGATGTAAAAATGCTAATTCATAGTTTTTCAGCAGTGTTGTTACTCAATTGTTTTTTGTCTCTTATTCATGGTTTTGTAGAATTTATTTACTTATTTGACTGCTGGTTTGAGAGTGGATCCATGCCTTATGCGTATATCCATTATCCTTTTGAGAACGTTGAGCTGTTTGAGAAGATTTTTCCTGGCCATTTTGTTGCTGAAGGACTGGATCAAACCCGTGGTTGGTTTTATACCCTAATGGTGCTGTCTACTGCATTATTTGGTAAGCCTGCCTTTAGGAATCTAATTTGCAATGGGCTTGTCCTCGCTGAAGATGGGAAAAAGATGAGTAAAAGCTTGAAAAATTATCCTTCACCAATGGAAGTTATTAATGATTATGGAGCGGATGCCTTGCGATTGTACCTTATAAATTCTCCTGTTGTACGTGCTGAGCCACTTCGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTTAGGGATGTTTTCCTTCCCTGGTATAATGCATATCGATTCCTTGTTCAAAATGCGAAGAGGCTTGAGGTTGAGGGTCTAGCACCTTTTGTCCCCTTTGATCAGGCCACACTTCAGAATTCATCGAATGTTCTTGATCAGTGGATCAACTCAGCCACCCAAAGTCTTGTTCATTTTGTCCGACAAGAAATGGATGGTTACCGCCTTTATACGGTGGTTCCTTATCTTCTAAAGTTTCTTGATAACCTTACAAATATATATGTGCGGTTCAACCGTAAGAGACTTAAAGGCCGTACTGGAGAAGAAGACTGCAGGACAGCACTCTCAACTCTCTACAATGTGCTTTTGGTATCCTGTAAGGTGATGGCTCCTTTTACACCTTTCTTCACCGAGGTACTGTATCAGAATATGCGAAAAGTTTGTAATGGAGCTGAAGAGAGCATACACTATTGCAGTTTTCCTGAGGAAGAAGGCAAGAGGGGAGAAAGAATTGAGCAAAGTGTTTCAAGGATGATGACAATAATTGATCTGGCACGGAATATTCGTGAGCGTCATAACAAGCCTCTTAAGACTCCACTCAGGGAGATGGTGATAGTCCATCCTGATGCAGACTTCCTTGATGACATAAATGGAAAGTTGAGGGAGTATGTTCTGGAGGAACTCAATATACGATCCCTTGTTCCATGTAATGATACTTTAAAGTATGCATCTTTACGTGCCGAGCCTGACTTTAGTATTTTAGGCAAGAGACTAGGAAAGTCTATGGGCATTGTTGCCAAAGAAATCAAGGCCCTGTCACAGGAAAATATTTTGGCTTTTGAGAATGCTGGAGAAGTCATCATTGCAAATCACTGTTTGAAGCTGTCTGATATTAAGGTTCTCCGTGATTTTAAACGTCCTGATGGTATGACTGAGAAGGAGGTTGATGCTGCTGGAGATGGTGATGTTTTGGTGATATTGGACTTGCGTCCTGATGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTTAACAGAATTCAGAAGCTACGAAAGAAAATTGCTCTCGAACCAACTGACACAGTGGAGGTTTACTTTGAATCATTGGATAACGATAAATCAATCTCTCAGAGAGTTTTGCAATCACAGGAATCCTATATCAGAGATGCTATTGGTAGTCACTTGCTTCCGCATTCTCTGATGCCTGCACATGCAGTTGTCATTGGTGAAGAGGTGTTCCATGGGATTTCTAACATGTCATTTGGTATTACTTTGGCAAGACCTGCATTGATGTTCAACACACAAGCCATTCTTTCACTGTTTACAGGTGATGCAAAATTGGCATATAATTTGCAAACTTACCTGCTATCTAGAGATCATTCAAATTTGAAGTCCGAGTTTCAGGATGGAAATGGAAAGAAAGTTATAGATTCAATTGAACAGCAACCTGCTGCACAAGTGGTTCTTGGTGAGCATGTCTTTCTCACTGTAGGGGATTACTACCTTGATGCAAAATCTGGCTGA 3636 0.4279 MEEVCEGKDFAFPKQEENILDFWSQIDAFHTQLALTENKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYHTMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKMGIGTYNEECRSIVTRYVEEWETIITRTGRWIDFKNDYKTMDLKFMESVWWVFAQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVYMTFPVVGDPHGASFVAWTTTPWTLPSNLALCVNANFTYLKVRNKYSGKVYVVAESRLSVLHNPKEKPKEAVANSSAGGPKITIAKSKGSSGGKTENVLDSFEVLEKFSGASLVGKKYEPLFDYFAELSDTAFRVVSDNYVTDDSGTGIVHCAPAFGEDDFRVCIDNQILSKDNLTVAVDDDGCFTEKITDFSGCYIKHADKDIIEAVKAKGRLVKSGAFTHSYPYCWRSDTPLIYRAVPSWFVRVELLKEQLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPIWISEDEKEIVVIDSVAKLEKLSGEKVSDLHRHNIDHITIQTESGRVLRRVDDVKMLIHSFSAVLLLNCFLSLIHGFVEFIYLFDCWFESGSMPYAYIHYPFENVELFEKIFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEVEGLAPFVPFDQATLQNSSNVLDQWINSATQSLVHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLVSCKVMAPFTPFFTEVLYQNMRKVCNGAEESIHYCSFPEEEGKRGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLDDINGKLREYVLEELNIRSLVPCNDTLKYASLRAEPDFSILGKRLGKSMGIVAKEIKALSQENILAFENAGEVIIANHCLKLSDIKVLRDFKRPDGMTEKEVDAAGDGDVLVILDLRPDESLFEAGAAREIVNRIQKLRKKIALEPTDTVEVYFESLDNDKSISQRVLQSQESYIRDAIGSHLLPHSLMPAHAVVIGEEVFHGISNMSFGITLARPALMFNTQAILSLFTGDAKLAYNLQTYLLSRDHSNLKSEFQDGNGKKVIDSIEQQPAAQVVLGEHVFLTVGDYYLDAKSG. 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00462 1211 Pfam Anticodon-binding domain of tRNA ligase 756 905 IPR013155 GO:0004812|GO:0006418
Seca6g00462 1211 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 717 965 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca6g00462 1211 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Seca6g00462 1211 PRINTS Isoleucyl-tRNA synthetase signature 581 594 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Seca6g00462 1211 PRINTS Isoleucyl-tRNA synthetase signature 429 444 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Seca6g00462 1211 PRINTS Isoleucyl-tRNA synthetase signature 621 630 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Seca6g00462 1211 Pfam tRNA synthetases class I (I, L, M and V) 585 698 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca6g00462 1211 Pfam tRNA synthetases class I (I, L, M and V) 307 556 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca6g00462 1211 Pfam tRNA synthetases class I (I, L, M and V) 19 272 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca6g00462 1211 Gene3D HUPs 433 558 IPR014729 -
Seca6g00462 1211 Gene3D HUPs 38 191 IPR014729 -
Seca6g00462 1211 Gene3D - 704 896 - -
Seca6g00462 1211 CDD Anticodon_Ia_Ile_ABEc 702 889 IPR033709 GO:0000049
Seca6g00462 1211 Pfam Domain of unknown function (DUF5915) 925 1092 - -
Seca6g00462 1211 SUPERFAMILY Nucleotidylyl transferase 11 712 - -
Seca6g00462 1211 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 200 431 IPR009008 GO:0002161|GO:0006418
Seca6g00462 1211 CDD IleRS_core 398 702 - -
Seca6g00462 1211 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca6g00462 1211 Gene3D - 193 432 IPR009008 GO:0002161|GO:0006418
Seca6g00462 1211 FunFam Isoleucine--tRNA ligase cytoplasmic 704 896 - -
Seca6g00462 1211 Hamap Isoleucine--tRNA ligase [ileS]. 2 1111 IPR023586 GO:0004822
Seca6g00462 1211 Gene3D HUPs 583 699 IPR014729 -
Seca6g00462 1211 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 556 IPR023586 GO:0004822
Seca6g00462 1211 FunFam Isoleucyl-tRNA synthetase,cytoplasmic 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00462 Seca-Chr6 13759313 13780898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00462 K01870 - gmx:100791830 2191.39