Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00461 ATGTTTTTGGTAAGACCCATTTTCCGAACACAGGGAAGACCCTCCCTTTGGGTTCTGCATTCTTCCTACAGTTCCTCTTCCTCAGCAGCTGCAATTCAAGCTGAGAGGACCATCAAACAAGGACCCAGAAACGATTGGACCCGAGAAGAAGTCAAATCCATCTATGACTCTCCAATTCTCGATCTTCTCTTCCATGGGGCTCAAGTTCACAGACATGCTCACAACTTCAGGGAAGTGCAGCAGTGTACTCTTCTCTCTGTCAAAACAGGTGGGTGTAGTGAAGATTGTTCCTATTGTCCTCAATCCTCCAGATATGACACAGGACTCAAAGCCCAGCGACTTATGAACAAGGAGGCTGTTCTACAGGCTGCAAAGAAGGCAAAAGAGGCTGGGAGCACTCGCTTTTGTATGGGTGCAGCATGGAGGGATACAATAGGAAGAAAGACCAACTTCAACCAGATCCTTGAATATGTAAAAGAGATAAGGGGTATGGGGATGGAGGTGTGTTGCACGCTTGGCATGCTGGAGAAACAGCAGGCTGTTGAACTCAAGAAGGCAGGTCTTACTGCCTATAATCACAATCTTGACACTTCAAGGGAATACTATCCAAACATCATCACAACAAGGACTTATGATGAGCGCCTAAAAACCCTTGAGTTTGTTCGTGATGCAGGGATTAATGTTTGTTCTGGAGGAATTATAGGGCTAGGAGAAGCTGAGGAGGACCGTGTGGGTTTGTTACATACATTATCAACACTTCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTCTTGCTGTAAAGGGAACCCCTCTTGAGGATCAGAAGGTGAATTTATTTAAATTGATTGACTTGTTAAACTACAGTAAGAGTGGAAGTATGTCAGTCATCCTTTAG 900 0.4489 MFLVRPIFRTQGRPSLWVLHSSYSSSSSAAAIQAERTIKQGPRNDWTREEVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKAQRLMNKEAVLQAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALLAVKGTPLEDQKVNLFKLIDLLNYSKSGSMSVIL. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00461 299 Pfam Radical SAM superfamily 88 247 IPR007197 GO:0003824|GO:0051536
Seca6g00461 299 SMART MiaB 82 292 IPR006638 GO:0003824|GO:0051536
Seca6g00461 299 NCBIfam biotin synthase BioB 45 277 IPR002684 GO:0004076|GO:0009102
Seca6g00461 299 SUPERFAMILY Radical SAM enzymes 44 280 - -
Seca6g00461 299 SFLD biotin synthase like 43 277 - -
Seca6g00461 299 ProSiteProfiles Radical SAM core domain profile. 77 296 IPR007197 GO:0003824|GO:0051536
Seca6g00461 299 PANTHER BIOTIN SYNTHASE 24 280 IPR002684 GO:0004076|GO:0009102
Seca6g00461 299 SFLD BATS domain containing 43 277 - -
Seca6g00461 299 CDD Radical_SAM 89 275 - -
Seca6g00461 299 PIRSF Biotin_synth 26 295 IPR024177 -
Seca6g00461 299 Gene3D Aldolase class I 43 289 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00461 Seca-Chr6 13754179 13758367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00461 K01012 - gmx:732577 511.916