Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00445 ATGGATAGCCTACAAGCCACATACAAAGACGAAGAAGATGAAGAAGACGAGGTCCCACCCACAGCCATCACCACAACCACCGCCGACGAACCCGCCGTCTCCGCCTCCGCCGCTGCCGCCACCGGCGGAGGAGGAGGAGCAGGTACCGACACAGAATCAATAGACGTGCCTCCCATCACCACCAGCACTCCCTCTGACACCCCAACCGAAGCCCAGAACGACGGCAGATCGGAGCCCGACCCTTCCGACGACCTCTCCGACGACGAAGCCGCATCCGACGGCTCCGCGGAACCAAAGAAATCTCCGAAACCTAGCAGAGAAGAAGGCGACGAAGACGAAGAAGAACCGCCTCCGAAGAAGCAGAAGCCACTGTCCTCTCTGAGCGGCGTGAAGGAGGGGGATTCACCGGCATTGCCGGAGGGCAATAATGGTCCGAGCAATGCGGCAGCAACGCCGATAACTGGGACGAATAACAATTCCAAGAAGTCGAAGAAGAAGAGCAACAACGTGTGGGTGACGAAATCAACTAGAAAAGGGAAGAAGAAGAGCAAGAACAACAACAACAACCACACTAATGGAGAAGATAACGTTCTGATAACTCCGGTTCCGAGGTTCCCGGACAAGAGCGACGACACGCCAGAGATGAAGATATGCTTGTCGAAGGTGTACAAAGCGGAGAAGGTGGAATTGAGTGAGGACAGGTTGAGTGCAGGGAGCACAAAGGGTTATAGAATGGTGAGGGCAACAAGAGGGGTTATAGAAGGGGCATGGTACTTTGAGATAAAGGTTGTGAAGTTGGGGGAGACAGGGCATACTCGTTTAGGTTGGTCCAATGAGAAGGGTGATTTGCAGGCACCGGTTGGGTATGATGGGAATAGTTTTGGTTACAGAGATATTGATGGGAGTAAGATACATAAGGCATTGAGGGAAAAGTATGGAGAGGAAGGGTACAAAGAAGGTGATGTTATTGGGTTTTATATCAATTTGCCTGAGGGAGAGAAATATGCACCCAAAACACCACATTTGGTCTGGTATAAAGGCCAACGATATGTTTGTGCACCAGATGCTAAGGAAGATCCACCCAGTGAAGTGCCTGGAAGTGAGATATCGTTCTTTAAAAATGGCGTATGCCAAGGTGTAGCTTTCAAGGATCTACATGGCGGTCGATACTATCCTGCTGCTTCAATGTATACTCTCCCCAACGAACCAAACTGCACAGTCAAGTTCAACTTTGGTCCTGACTTTGAATTCTTTCCTGAGGATTTCAATGGACGGCCAATTCCCAGGCCAATGATTGAAGTTCCTTATCACAGTTTTGAAAATCGAGTTGAAAATGGAGAGTCTAATGAGAAGAAATCCTAG 1362 0.4985 MDSLQATYKDEEDEEDEVPPTAITTTTADEPAVSASAAAATGGGGGAGTDTESIDVPPITTSTPSDTPTEAQNDGRSEPDPSDDLSDDEAASDGSAEPKKSPKPSREEGDEDEEEPPPKKQKPLSSLSGVKEGDSPALPEGNNGPSNAAATPITGTNNNSKKSKKKSNNVWVTKSTRKGKKKSKNNNNNHTNGEDNVLITPVPRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVIEGAWYFEIKVVKLGETGHTRLGWSNEKGDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGEEGYKEGDVIGFYINLPEGEKYAPKTPHLVWYKGQRYVCAPDAKEDPPSEVPGSEISFFKNGVCQGVAFKDLHGGRYYPAASMYTLPNEPNCTVKFNFGPDFEFFPEDFNGRPIPRPMIEVPYHSFENRVENGESNEKKS. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00445 453 ProSiteProfiles B30.2/SPRY domain profile. 197 416 IPR001870 -
Seca6g00445 453 CDD SPRY_Ash2 228 415 - -
Seca6g00445 453 MobiDBLite consensus disorder prediction 1 202 - -
Seca6g00445 453 PANTHER SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 41 445 IPR037353 GO:0048188|GO:0051568
Seca6g00445 453 MobiDBLite consensus disorder prediction 92 120 - -
Seca6g00445 453 FunFam Protein TRAUCO 216 429 - -
Seca6g00445 453 MobiDBLite consensus disorder prediction 54 75 - -
Seca6g00445 453 SMART SPRY_3 254 415 IPR003877 GO:0005515
Seca6g00445 453 MobiDBLite consensus disorder prediction 140 174 - -
Seca6g00445 453 Pfam SPRY domain 257 333 IPR003877 GO:0005515
Seca6g00445 453 Gene3D - 215 429 IPR043136 -
Seca6g00445 453 SUPERFAMILY Concanavalin A-like lectins/glucanases 215 419 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00445 Seca-Chr6 13460518 13465771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00445 K14964 - gmx:100816796 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00445 6 13460518 13465771 Seca6g00445 6 13460518 13465771 ECH