Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00428 ATGATTAAGTTTCATGGTAGCTATCAGCAGTACAATAGAGAGGAGCGTGGCTCCAGAACCTACTCGTTTATGATACGTACTAAGAACCCTTGTGGGAAGGTTTCAAACCAACTCTACTTGACCATGGATGATCTTGCTGACCAGTTTGGAATTGGGACACTTCGTTTGACTACTAGACAAACATTTCAGCTCCATGGTGTTTCCAAGACCAACCTTAAAACAGTAATGGGTACCATTATCAGAAATATGGGCTCAACTCTTGGTGCATGTGGTGACCTGAACAGAAATGTGCTTGCTCCCCCTGCTCCCTTTGTGAGGAAAGATTACCTCTTTGCTCAACAGACTGCGGAAGACATTGCTGCTCTCCTGTCTCCTCAGTCTGGTTTCTACTATGATATTTGGGTAGATGGGGAAAGGATTGTGTCATCAGAACCACCTGAGGTAGTTCGGGCACGAAATGACAATTCTCATGGTACAAACTTCCCAGATTCACCTGAGCCCATCTATGGAGCCCAGTTCTTGCCCAGGAAATTCAAAATTGCAGTTACCGTGCCAACTGATAACTCTGTCGATATTCTCACAAATGATATTGGTGTCGTTGTTGTTACTGATGATGATGGGGAGCCTCAAGGATTCAACATTTATGTTGGTGGTGGAATGGGAAGAACACATAGGTTGGAAAGCACTTTTCCCCGCTTGGCTGAACCATTGGGTTATGTACCAAAAGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGAAGAAGAGATGACCGCAAGTATAGTAGAATGAAGTATTTGATCAGCTCGTGGGGAATTGAAAAGTTCAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTCCCGCAACTTGCCGGAATGGGAATTTAAAAGTCATCTTGGGTGGCATGAGCAGGGCAATGGCAGTTTATTTTATGGCCTTCATGTTGATAATGGTCGTATTGCTGGAAAAATGAAGAAGACATTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTTCGGATCACTCCAAATCAGAACATCATATTGACTGATATTCGTGCTGCATGGAAGCGCCCCATCACAACCACTCTTGCTCAAGCTGGTCTTCTGCAACCTAGATTGGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTGTGTCCACTGGCAATTACCGAAGCTGAACGTGGGATACCAAACATTCTTAAACGGATTCGTGCTGTTTTTGAGAAGGTTGGTCTGAAGTATAACGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCGAATGGTTGTGCTAGACCATACATGGCCGAGCTTGGACTGGTTGGTGATGGCCCAAATAGCTATCAGATTTGGCTTGGAGGAAACAAGAATCAAACGGCATTAGCTCAAAGTTTCATGGACAAGGTGAAGATTCAAGAGCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAACCCGGATGGGATTTGAGAAGCTTAAAGAATATGTTCAGAAATGGGAGGGTCCAGTAGTAGCACCAGCTCGTTACAACCTCAAGCTTTTTGCTGACAAGGAAACATACGAAGCAGTGGATGAATTAGCAAAGCTTCAAAACAAGAGTGCTCATCAATTGGCCATGGAAGTTATCCGCAATTATGTTGCTTCCAACCAAAATGGAAAAGGTGAATTATTTCATTAA 1767 0.4284 MIKFHGSYQQYNREERGSRTYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVSKTNLKTVMGTIIRNMGSTLGACGDLNRNVLAPPAPFVRKDYLFAQQTAEDIAALLSPQSGFYYDIWVDGERIVSSEPPEVVRARNDNSHGTNFPDSPEPIYGAQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRLESTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPSRNLPEWEFKSHLGWHEQGNGSLFYGLHVDNGRIAGKMKKTLREVIEKYNLNVRITPNQNIILTDIRAAWKRPITTTLAQAGLLQPRLVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFEKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKNQTALAQSFMDKVKIQELEKVLEPLFYYWKQKRQSKESFGDFTTRMGFEKLKEYVQKWEGPVVAPARYNLKLFADKETYEAVDELAKLQNKSAHQLAMEVIRNYVASNQNGKGELFH. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00428 588 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 309 381 IPR036136 GO:0016491
Seca6g00428 588 Pfam Nitrite and sulphite reductase 4Fe-4S domain 389 528 IPR006067 GO:0016491|GO:0020037|GO:0051536
Seca6g00428 588 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 91 306 IPR045854 -
Seca6g00428 588 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 2 90 IPR036136 GO:0016491
Seca6g00428 588 NCBIfam sulfite reductase, ferredoxin dependent 1 529 IPR011787 GO:0020037|GO:0050311|GO:0051539
Seca6g00428 588 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 312 365 IPR005117 GO:0016491
Seca6g00428 588 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 20 76 IPR005117 GO:0016491
Seca6g00428 588 Gene3D Sulfite Reductase Hemoprotein, domain 1 386 533 IPR045854 -
Seca6g00428 588 Pfam Nitrite and sulphite reductase 4Fe-4S domain 119 294 IPR006067 GO:0016491|GO:0020037|GO:0051536
Seca6g00428 588 FunFam Sulfite reductase [ferredoxin], chloroplastic 386 536 - -
Seca6g00428 588 FunFam Sulfite reductase [ferredoxin], chloroplastic 90 299 - -
Seca6g00428 588 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 439 455 IPR006066 GO:0016491|GO:0020037|GO:0051536
Seca6g00428 588 FunFam Sulfite reductase [ferredoxin], chloroplastic 299 382 - -
Seca6g00428 588 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 1 533 IPR045169 GO:0016491|GO:0020037|GO:0051536
Seca6g00428 588 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 388 538 IPR045854 -
Seca6g00428 588 Gene3D Sulfite Reductase Hemoprotein, domain 1 95 300 IPR045854 -
Seca6g00428 588 Gene3D Sulfite Reductase Hemoprotein;Domain 2 21 94 - -
Seca6g00428 588 PRINTS Sirohaem Fe-binding site signature 390 408 IPR006066 GO:0016491|GO:0020037|GO:0051536
Seca6g00428 588 PRINTS Sirohaem Fe-binding site signature 439 457 IPR006066 GO:0016491|GO:0020037|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00428 Seca-Chr6 12752274 12757105 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00428 K00392 - gmx:547693 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00428 6 12752274 12757105 Seca6g00428 6 12752274 12757105 ECH