Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00416 ATGGATTGCGGCGTCGGATCCATCGTATGGGTGCGACGGAGGAACGGGTCGTGGTGGCCGGGTCAAATACTTGGCCCCGATGACCTCTCCGCTTCTCATCTCACCTCTCCTCGATCAGGAACTCCCGTCAAGCTTCTCGGCAGGGAAGACGCCAGCGTGGATTGGTATAATTTGGAGAAATCCAAGCGTGTCAAGGCATTCCGATGTGGCGAGTTTGATGATTGTATTGAAAGGGCTGAATCCTCCCAGGGGATGCCATTGAAGAAAAGAGAGAAATACGCCCGCCGAGAAGATGCTATTCTTCATGCTCTTGAACTCGAGAGACAAATGTTGAAGAAGCAAGCGAAATTAGGTATTGCTTGTTCTGATCGAATCAATTGTAGATCATCTAATACTGTTAAAAAGGGCATAGTTACGACGTTGCCGCTGGAAACACTGGGAAATGATAATGAAAATTGTGCAAATTCCAAATCATATATGTCTTGTGAAAATGAAATTGCTGGAGGTTCTTTTACTTCAGAATTAGCCAAGGAGGGCAATCGACTGAGTGGGGAAGTGGATCTTTCTGAAGCAACACCTCGGATGCGAGGCTTGCAGGATTTTGGGCTCAAAATTGCCCCCTTTAAAGGGAAACTTTCGTCTTCCGTTGATCCAAATGTTTCTCCAAAACTTGCAGTTGATGAGGGTGCTCGGACTCTTGCAAGTGGTAGTCTTTGCATGGGGAGTGCACTTCACACAGATGGAGCTGGGCAAATAGCTTGCCGAGCAAAGAGGAGCAGATGTGTGTATTTTCCAGCCGAGTCTGGTGATTCTCTTGATTACAAGGAAACTCTAGCCCATGTTGAGATGTCATCTCCCCAACTTGGAGGGGAGTTTCCTTATCGTGGTTCTTTGGTTGGAGAGACTGAATCAACTTTTATGGATGATGTTGAATCTGATTCTTCAGATACAGGTTCTACTGATTCTGATTCAGATTCTTCTGAGACAGAACCAGACATGGATGAGGAAATGACTATACTTACAGAAACTGGTCGGGATGCTGAAGAACATGAAAGCACTAGCAGTGAGGAGCCTGATGAATTAGCAATTACCAGCGATATGCCTCACCTCTATCCTCGTGAACTGATAACATCTAATGAAGCTGTGTCTAAATGGCAACTAAAAGGGAAAAGGAATAGTCGGAATCTTGTAAGGAGGTCTTTTGGTGCTCCTAATGGAAAAGGAATTATATATGGATCAGAAGCGGATTTTGAAGGAAGAAAAAGTCATTTTCATAAGAGAATGGGTTCGAATTTGCATTACTACAGAAATTATTTCAGTGATGTACTTGATGACAATGATCAAATGTTTGGACTGGAAGATGAATATTCTCTAACACCTAGAGCTGTATCAAAAAGACGAAATAAAATTCATCATGGTTTTGATTGGAATGATTGGGCCTGGGATGATCATCTTGCTTCAAAAGGATATTGGGATATTCAAGGATATACTCCAATATATGGTGATCGTTATCGTTTTGGTGGGAGGATGAGGTCAATGCTGGTTAATGTAGATTTGAAGGTTCAAGCAAGCTATCGGAAAGAGCCTGTACCCATTGTTTCTCTCATGAGTAAATTAGATGGGAAGGCAATAATAGGGCACCCAATCCAGGTTGAAGCCCTTAAGGATGGTTCATCTGATATTCTATTTTCTGCAATTGATGACTTAAGTAATGATGGGATCGGTATTGAGGGAAGTAGCATGCTTCCACCAGCATGGAGGACTGCAAGAAGAACAGCAAATTTCCGTGTCCCTCGCCCCCATGTATTTTCATCAAATGGTGCTAATGTTGCTTCAGAGTTTCCTTCCTTAGATCAAGATCAAAACTTTGAGTATAAAAGGTTAAACGCTGGAAGTTCCAGTCATAAGGCAAGTCTTCAAAAGAAGAGTGGCCTTAAAAGTCACCGGTCTTCAGCTGACAAAAGGTCCTCAAAAAAGGTGCCAAAGAAGTTGAGCTTGTCATCTAACCAGAAAACTAGAACTCTGTCCTCATTATCTGAACATAATCTTAGTAGAAAGTCATTACATGATAGCAGTAGTTATCCAACAGATAGATTGATTAAACCAGAAATCTCTGGGCCCACCACAGTAGCTTGCATACCAATCCAGTTAGTATTTAGTAGATTACTTGAGAAGATTAATAGGCCTCCATTGAGAAGTAATGCACCTTTACTGAATACTGGTGTGGAGAGAAATTCATAG 2241 0.4235 MDCGVGSIVWVRRRNGSWWPGQILGPDDLSASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEFDDCIERAESSQGMPLKKREKYARREDAILHALELERQMLKKQAKLGIACSDRINCRSSNTVKKGIVTTLPLETLGNDNENCANSKSYMSCENEIAGGSFTSELAKEGNRLSGEVDLSEATPRMRGLQDFGLKIAPFKGKLSSSVDPNVSPKLAVDEGARTLASGSLCMGSALHTDGAGQIACRAKRSRCVYFPAESGDSLDYKETLAHVEMSSPQLGGEFPYRGSLVGETESTFMDDVESDSSDTGSTDSDSDSSETEPDMDEEMTILTETGRDAEEHESTSSEEPDELAITSDMPHLYPRELITSNEAVSKWQLKGKRNSRNLVRRSFGAPNGKGIIYGSEADFEGRKSHFHKRMGSNLHYYRNYFSDVLDDNDQMFGLEDEYSLTPRAVSKRRNKIHHGFDWNDWAWDDHLASKGYWDIQGYTPIYGDRYRFGGRMRSMLVNVDLKVQASYRKEPVPIVSLMSKLDGKAIIGHPIQVEALKDGSSDILFSAIDDLSNDGIGIEGSSMLPPAWRTARRTANFRVPRPHVFSSNGANVASEFPSLDQDQNFEYKRLNAGSSSHKASLQKKSGLKSHRSSADKRSSKKVPKKLSLSSNQKTRTLSSLSEHNLSRKSLHDSSSYPTDRLIKPEISGPTTVACIPIQLVFSRLLEKINRPPLRSNAPLLNTGVERNS. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00416 746 ProSiteProfiles PWWP domain profile. 5 60 IPR000313 -
Seca6g00416 746 MobiDBLite consensus disorder prediction 662 694 - -
Seca6g00416 746 MobiDBLite consensus disorder prediction 308 335 - -
Seca6g00416 746 MobiDBLite consensus disorder prediction 629 701 - -
Seca6g00416 746 MobiDBLite consensus disorder prediction 343 362 - -
Seca6g00416 746 CDD PWWP 6 106 - -
Seca6g00416 746 Pfam PWWP domain 6 86 IPR000313 -
Seca6g00416 746 PANTHER T17B22.17 PROTEIN-RELATED 2 733 IPR044679 -
Seca6g00416 746 SUPERFAMILY Tudor/PWWP/MBT 4 108 - -
Seca6g00416 746 Gene3D - 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00416 Seca-Chr6 11933913 11938911 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00416 - - aprc:113864977 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00416 6 11933913 11938911 Seca6g00416 6 11933913 11938911 ECH