Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00408 ATGGCCGCCGAGAAGCTCCGAGATTTGAGCCAACCAATTGATGTGCCTTTGCTCGATGCCACCGTCGCTGCCTTCTATGGCACCGGATCTAAGGAAGAGAGAAGTGCTGCTGATCAGATTTTGCGAGACTTGCAAAATAATCCCGATATGTGGCTCCAAGTCATGCATATCTTGCAAAACACTCAAAATCTGAATACCAAGTTCTTTGCCTTGCAGGTTCTAGAAGGTGTAATTAAATACAGATGGAATGCATTACCTGTTGAGCAGCGAGATGGGATGAAAAATTTCATCTCTGACGTTATTGTACAGCTTTCTAGCAATGAGGCCTCATTTCGAATGGAAAGGTTGTATGTCAACAAACTCAATATTATATTAGTTCAGATTTTGAAGCATGAGTGGCCAGCAAGATGGCGAAGCTTTATTCCTGACCTTGTCTCAGCAGCTAAAACTAGTGAAACAATTTGTGAGAATTGCATGGCTATATTGAAACTTTTGAGTGAAGAGGTTTTCGATTTTTCAAGAGGAGAGATGACTCAGCAGAAGATAAAAGAGCTCAAACAATCATTGAATAGTGAATTTCAACTTATACATGAGTTATGCTTATATGTGTTATCGGCGTCCCAAAGGACTGAGCTCATACGTGCAACACTGTCTACATTGCATGCCTTCTTATCATGGATTCCCTTGGGTTATATATTTGAATCACCATTGCTTGAGACACTCCTAAAGTTTTTCCCAGTTCCAGCATATCGGAACTTAACATTGCAATGTTTAACGGAGGTGGCAGCCCTTCAATTTGGGAATTATTATGATGTGCAGTATGTCAAGATGTACAGTATATTCATGGGCCAATTGCAGAGCATACTCCCACCTACTACAAATATACCTGAGGCATATGCACATGGCTCAAGTGAGGAACAAGCATTTATACAAAACCTGGCACTGTTCTTCACCTCATTTTACAAGGTTCACATTCGCACCCTGGAATCCACTCAAGAGAATATATCTGCTTTGCTATTGGGCCTTGAATATCTTATCAACATTTCATATGTGGATGATACTGAGGTTTTTAAGGTCTGTTTAGACTACTGGAATTCCTTGGTGTCAGAACTGTTTGAGCCAAACCGTAGTCTGGATAATCCTGCAGCTGCTGCAACCATGATGGGACTTCAGGTACCGGCAATGCTCCCTGGTATGGTTGATGGGCATGGTTCGCAGCTTCTTCAGCGCCGACAGCTTTATGCTGGTCCCATGTCAAAGTTGAGAATGCTTATGATCTGCCGTATGGCTAAGCCTGAAGAGGTTCTCATAGTTGAGGATGAAAATGGGAATATTGTTCGCGAAACCTTGAAGGACAATGATGTTCTCGTTCAATATAAGATTATGAGGGAGACTCTGATTTACTTGTCACACCTTGACCATGATGATACTGAAAAGCAGATGCTGAGGAAATTAAGTAAACAACTAAGTGGTGAGGATTGGACATGGAACAATTTGAACACGCTCTGCTGGGCAATAGGATCTATATCTGGTTCCATGATGGAAGAACAGGAAAACAGATTTTTGGTTATGGTCATTCGTGATTTATTAAACCTATGTGAAATCACAAAGGGAAAAGATAACAAAGCAGTTATTGCAAGTAATATCATTGGCAGGTATGTTGTTGGGCAGTATCCACGGTTTTTAAGAGCTCATTGGAAGTTTCTTAAAACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAAACACATCCTGGAGTTCAGGATATGGCCTGTGACACATTTCTGAAAATTGTCCAGAAGTGCAAGCGTAAATTTGTGATCACCCAGGTTGGGGAAAATGAGCCATTTGTATCTGAACTTTTATCAGGCCTTCCTATCACCATTGCGGATCTTGAACCCCATCAGATACACTCCTTCTATGAATCTGTTGGTCACATGATTCAAGCAGAATCAGATGCACAGAAGAGAGATGAATATCTTCAGCGGTTGATGGAGCTCCCAAATCAGAAATGGATGGAAATTATAGGGCAGGCACATCAAAATGTTGACTTTTTGAAGGATCAAGATGTAATCCGGACTGTGCTTAATATATTGCAGACGAATACAAGTGTTGCATCTTCTTTAGGGACATATTTTCTGCCCCAAATCTCATTGATCTTTTTGGACATGTTGAATGTGTACAGAATGTACAGTGAGCTTATTTCAAAAAGTATTACCGAAGGGGGACCTTTTGCATCTAGAACATCCTATGTGAAACTTCTACGTTCGGTTAAGAGGGAGACACTTAAACTGATTGAGACATTCTTGGATAAGGCTGAGGATCAACCGCAAATTGGAAAACAATTTGTGCCACCAATGATGGATCCTGTGCTGGGAGATTATGCTAGGAATGTTCCTGATGCAAGGGAATCGGAGGTTTTGTCACTTTTTGCCACAATTGTAAACAAATATAAAGCTGCAATGATTGAAGATGTACCTCGCATATTTGAAGCTGTTTTTCAGTGCACACTAGAGATGATTACAAAAAATTTTGAAGATTACCCAGAGCATAGGCTTAAGTTTTTCTCTCTACTCCGTGCCATAGCCACTCATTGTTTTCCTGCATTAATCTGCTTGTCAAGTCAGTCTCTGCCTGATATTTTTTGTTATCTATGTCAGCAACTGAAGCTTGTTATGGATTCAATTATATGGGCATTTCGGCATACAGAAAGGAATATTGCTGAAACTGGGCTAAACCTGTTATTGGAGATGTTAAAGAAGTTTCAGGGATCAGAATTCTGCAATCAGTTTTATCGGACATATTTTTTGACAATTGAACAAGAGATATTTGCAGTCTTGACTGACACGTTTCATAAGCCTGGGTTCAAATTACATGTGTTGGTGCTTCAGCATTTATTCTGTCTGCTGGAAACCGGTGCCCTAACTGAGCCTCTTTGGGATGTTGCTACAAATCCATATCCATACACAAGTAATGCAGTATTTGTACGTGAGTTTACCATAAAGCTTCTAAGCACTTCTTTCCCCAACATGACAACAGCTGAGGTTACCCAATTTGTTAATGGACTCTTTGAGTCCACAAATGATCTCTCCACATTTAAAACTCACATAAGAGATTTTCTTGTGCAGTCCAAAGAATTTTCTGCTCAGGATAACAAAGATCTCTACGCTGAAGAGGCTGCAGCTCAGAGAGAGAGGGAACGACAAAGAATGCTTTCAATTCCAGGGCTTATTGCCCCGAGCGAGTTGCAAGACGAGATGGTGGACTCATAG 3273 0.4064 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERSAADQILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNEASFRMERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYSIFMGQLQSILPPTTNIPEAYAHGSSEEQAFIQNLALFFTSFYKVHIRTLESTQENISALLLGLEYLINISYVDDTEVFKVCLDYWNSLVSELFEPNRSLDNPAAAATMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIIGRYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLSGLPITIADLEPHQIHSFYESVGHMIQAESDAQKRDEYLQRLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNILQTNTSVASSLGTYFLPQISLIFLDMLNVYRMYSELISKSITEGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKAAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQSLPDIFCYLCQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETGALTEPLWDVATNPYPYTSNAVFVREFTIKLLSTSFPNMTTAEVTQFVNGLFESTNDLSTFKTHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS. 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00408 1090 Pfam Exportin 1-like protein 115 258 IPR013598 -
Seca6g00408 1090 SMART CRM1_C_2 716 1049 IPR014877 GO:0005049
Seca6g00408 1090 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Seca6g00408 1090 Pfam Chromosome region maintenance or exportin repeat 337 372 IPR041123 -
Seca6g00408 1090 Pfam CRM1 / Exportin repeat 2 410 477 IPR041235 -
Seca6g00408 1090 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Seca6g00408 1090 Pfam CRM1 C terminal 716 1048 IPR014877 GO:0005049
Seca6g00408 1090 PANTHER EXPORTIN 1/5 4 1088 IPR045065 GO:0005049|GO:0006611
Seca6g00408 1090 SUPERFAMILY ARM repeat 22 1038 IPR016024 -
Seca6g00408 1090 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Seca6g00408 1090 FunFam protein EXPORTIN 1A 1 1074 - -
Seca6g00408 1090 Pfam CRM1 / Exportin repeat 3 491 540 IPR040485 -
Seca6g00408 1090 Gene3D - 1 1073 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00408 Seca-Chr6 11849610 11864092 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00408 K14290 - gmx:100813443 2065.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00408 6 11849610 11864092 Seca6g00408 6 11849610 11864092 ECH