Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00384 ATGAGTGACAATTTGATGGAGAAAGTAAACGCCTTTGGAGAGCGCCTCAAAATTGGTGGTGCTGAGGTGGGTCGAAAGATGAGTGCTGGCTTGAGTTCTGTTAGCTTCAAGGTAAAAGAGTTTTTCCATGATCCAAATGAGGCTGATAAACTTGTTGGTGATGCTACCTCTGAGTCCCTTGATGACCCTGACTGGGCCATCATTCTTCATCTCTGTGACTTGGTCAATGCTGAAAAGCTTAACACTGCTGAAGTGGTGCGTGCAATAAAGAAAAGGGTCATGACAAAGAGTCCTAAAGGACAGTACCTGGCTTTGGTTTTGGTTGAAGCATTAGTCAAGAACTGTGATAAGGCTTTCTTTGAGGTGGCAGCTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAAACTGTTGTTCATAACAGAAACAAGGCTTTGATGATGATTGAGGCTTGGGGAGAATCAAACATTGAGCTTCGTTATCTGCCTGTTTATGAAGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGGTTCCCTGGTCGTGACAATGAAAGCTTAGCTCCTATTTTCACTCCTCCTCGTTCTGCTTCTGCTCCAGAGGCTGATATCACTCTTGCACATCTTATTCAGCATGATGTTCCTGTGCAAGCTTCTGATCCAGAGGCTAATGTCAGTCTTGGACATCTTATTCAGCATAATATTCCTGTGCAAAGTTTTACTTCTGAACAAACAAAGGAAGCTTTTGATATTGCAAGAAATAGCACTGAGCTTCTTTCAACCGTGTTATCTTCTTCACCTCAGCAAGACATTCTAAAGTATGAGAGCACACCCAATGCTCATAAGAAGGAAGCTGCCTTATAG 873 0.4284 MSDNLMEKVNAFGERLKIGGAEVGRKMSAGLSSVSFKVKEFFHDPNEADKLVGDATSESLDDPDWAIILHLCDLVNAEKLNTAEVVRAIKKRVMTKSPKGQYLALVLVEALVKNCDKAFFEVAAERVLDEMVKLIDDPQTVVHNRNKALMMIEAWGESNIELRYLPVYEETYKSLKSRGIRFPGRDNESLAPIFTPPRSASAPEADITLAHLIQHDVPVQASDPEANVSLGHLIQHNIPVQSFTSEQTKEAFDIARNSTELLSTVLSSSPQQDILKYESTPNAHKKEAAL. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00384 290 CDD VHS 48 177 - -
Seca6g00384 290 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Seca6g00384 290 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Seca6g00384 290 SUPERFAMILY ENTH/VHS domain 42 183 IPR008942 -
Seca6g00384 290 Gene3D - 40 201 IPR008942 -
Seca6g00384 290 PANTHER TOM1-LIKE PROTEIN 1 1 278 IPR044836 GO:0035091|GO:0043130|GO:0043328
Seca6g00384 290 SUPERFAMILY GAT-like domain 180 278 - -
Seca6g00384 290 FunFam TOM1-like protein 2 41 200 - -
Seca6g00384 290 Pfam VHS domain 47 179 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00384 Seca-Chr6 11172225 11175509 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00384 - - ccaj:109799203 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00384 6 11172225 11175509 Seca6g00384 6 11172225 11175509 ECH