Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00360 ATGAATTTCAACAACGTGAAGGTCCCTAAGGTTCCTGGCAGTGGAATCTCTGCTTTACTTAAAGTTAGTATTATTGGTGGGCTTGCTGTATATGGAGCTGCAAACAGTTTGTACAATGTGGAAGGAGGCCATCGAGCCATTGTCTTCAACCGTATAACTGGTGTCAAAGATAAGGTCTATCCTGAAGGAACACATATTATGATTCCGTGGTTTGAGTGGCCTGTGATCTATGATGTTCGTGCACGCCCCCATTTAGTAGAGAGTACTTCAGGAAGCCGTGATCTCCAAATGGTGAAAATTGGACTTAGAGTCCTTACTCGCCCCGTGCCAGACCAATTACCAACAGTTTATCGAACTCTGGGTGAGAATTATAATGAAAGGGTCCTTCCTTCTATTATACATGAAACTCTCAAAGCTGTGGTTGCACAGTATAATGCCAGTCAGCTCATTACTCAGAGAGAGGCTGTTAGTCGAGAAATAAGGAAGATATTGACCGAAAGGGCCTCCCATTTTAACATTGCATTGGATGATGTGTCAATCACTAGTTTGACATTTGGGAAGGAGTTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCCAAATTTGTTGTAGAAAAAGCTGAACAAGATAAAAGAAGTGCAGTTATTAGAGCACAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCTATTGCCAATAATCCTGCATTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGATATCGCTCAAACAATTTCAAACTCTGCCAACAAGGTTTACTTGAATTCAGACGACCTCTTGCTGAATCTTCAGGAATTAAATTTGGAGCCCAGTGGAAAGAGATAG 870 0.4241 MNFNNVKVPKVPGSGISALLKVSIIGGLAVYGAANSLYNVEGGHRAIVFNRITGVKDKVYPEGTHIMIPWFEWPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASHFNIALDDVSITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAARDIAQTISNSANKVYLNSDDLLLNLQELNLEPSGKR. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00360 289 SMART PHB_4 36 197 IPR001107 -
Seca6g00360 289 Pfam SPFH domain / Band 7 family 39 214 IPR001107 -
Seca6g00360 289 Coils Coil 196 216 - -
Seca6g00360 289 PANTHER PROHIBITIN 1 283 IPR000163 GO:0016020
Seca6g00360 289 SUPERFAMILY Band 7/SPFH domain 68 204 IPR036013 -
Seca6g00360 289 CDD SPFH_prohibitin 37 231 IPR000163 GO:0016020
Seca6g00360 289 Gene3D Band 7 domain 67 199 IPR036013 -
Seca6g00360 289 FunFam Prohibitin 2 65 199 - -
Seca6g00360 289 PRINTS Prohibitin signature 98 117 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 192 215 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 167 186 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 121 139 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 215 231 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 80 96 IPR000163 GO:0016020
Seca6g00360 289 PRINTS Prohibitin signature 144 160 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00360 Seca-Chr6 10455077 10461958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00360 K17081 - gmx:100811958 520.776