Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00338 ATGGGAGTTATCGGCTTTGAAATCAACGGGAATTCTGCTTTGCATTATGGTAGGAATTCGTTCTCTTCATATGCGATTCCTATTTCTTCGAGACCCTTTTTTGGCAATGTCTTGAACACGAGGGTTATAAGGAAGTTTCAGGTATATCATGCTCGAAAGCTCAATTTTGGGCCAGTTATGGTTTCGCTGAATGGTGGTTCTAATGCTGGGTTGGTTAGTGACGGGCTTCTTCCCAAGGAATTGGAATTTAAGCCATCCTTCGACCAATATTTGAAGGCTATGGAATCTGCCAGAACTGTTAGGGGCAAGAAGCATGGTGCTGCTACAACTCAAAAACAGAAGAGGATGGGAAAGGGAGGTGAAGGAAATAAAGTTAAAAATTTTAAAAGGGTCGGAGAGAAAATTGATAGAAAAGATGGGTTGGTAGCTGCTAAAGAAGATGTGGTATTAAAAGTTGATGAAGCATTTATGTATAAAGAAGGCTCCTCCACAAGTAATGGTAAAGTCAGAGGAAAACCATTCAAAGGATTTAAGAGTGAATATGATGGGAAAGAAAGCAAGATTGATGTAAAGACAAAGCAGAAACATGGGGCAAACATAAGACAAGATGGGTGGTTGAAACGCCAGAGCCATAGTTTAGAACCAGAATCAGATGACTGCAGCATGATTAAGAGTCAAGGTAAAAGTGGAAGTAGAAGGATAAGCAATAAAATAATTAGGTCTAATTCGAATGGTAGCAGTGGGAGTGTCATAGAGAGGGGAGTCACTCATGATTTATATTCTTCAAAGATGTCAGGAGATAGCAGACAAAGGGATCGCATTCGCAACACACAGGGTGAAACCCCTGGTGCAGATAGAATTGTGGGTAACAAAAAAGTTATGGATAGAGGGCTTGTTAGAAGACATACTGAAATTGAGAGTTTGATGAATAGAAATGGACAGGCAAATGTCAAAGTCAAATTGAATGGAAGCCGTAAGCCTTTCCTTGATAGGGGTTATGATTCTGACAACTTGGAGGTGGAACGAGCAGCATTCAAGAATCTTAAGGATTCAAACAATGTTATTGGCAAGCCACAATTTTCACACAAGGAAATGGAGGAGAGAATTGAGAAGTTAGCCAAATCGTTGAATGGTGCAGATATCAATTTAGCTGAATGGATGTTTTCTAAGATGATGAGAAGTGCAAAGCTCAAATTTAATGACTATTCTATAAGAAGGATTATCACAATCTTGGGAAATCTTGGAAACTGGCGGCGAGTGATACAGGTCATTGAATGGCTTCAAAAGCGTGAGCGTTTCAAATCCCATAAGCTAAGGCATGTGTATACTGCTGCTCTTGATGCGCTTGGGAAGTCGAGGAGACCTGTTGAGGCACTAAATGTATTTCATGCAATGCAGCAACAAATGTCCTCATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGCGATCTCCACCAAAGAAGAAGCTGAAAACAGGGATATTTGAGAACTGGGACCCTAGGCTAGAACCAGATATCGTAGTCTATAATGCAGTCCTTAATGCTTGTGTTAAGCGGAAACAGTGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGAAGCAGGGCCTACAACCTTCTGCTGTGACTTATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAATTTGGTTCATGAATTTTTTAGAAAACTTCAGAAGTCTTCTATTCCCAACTCGTTGACATATAGAGTTCTTGTGAATACATTTTGGAAAGAGGGAAAAACTGATGAGGCTATATCAGCTGTCCAAGAAATGGAAACACGTGGAATTGTAGGTTCTGCTGCTCTTTATTATGATCTAGCTCGATGCCTATGTGCAGCTGGAAGAGCTCATGAGGCACTAATGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCATTAGTTGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGACACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCCAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACCTGGCGCATGGGATGTTTCAAGAAGCTAAGGAGTTGTTTGAGCAAATGTTAGAAAACACAAATAATCCGAGTGCAAGTACTGATTACAAAATGCGGGTGATACCAGATATATACACATTCAATATCATGTTAGATGCATGTGTTGCAGAGAAAAGATGGGATTATTTTGAGTATGTCTATCAAAGGATGCTGTACCATGGTTACCACTTCAATCCAAAGCGACATCTTCGAATGATACTGGAGGCTTCAAGAGCTGGAAAGGAAGGGCCATTGGAGATAACATGGAAGCACTTGACTGCTACAGATCGAATTCCACCAGCTCCTCTGATCAAGGAGAGGTTCTGTGCGAAGCTTGAGAAAGATGACCATGTTGCTGCTCTCACATGTATCACCAATAATCCCCCAAAAGACTTGCAGCCATTTTCCAAGTCATCGTGGTTGAATCTATTCCAAGAAAATTCTCAACGGTTTCAGAAGGATACACTTGTTAGACTAATGAATGGGGCTAGCAATATAGTTTCCAATAGTAGCATGCCAAATCCAATTCTTGTCTATTTAATGCAATCATGCAAAGAATTTTTTTTGGCTCCTGACTTCAATGCAGCTCACATGGATTCAGTAAAAAATGTATTTGCAGTAGAAAATAAACTGGAAGTAGTCAGCTCTAGATGA 2796 0.4027 MGVIGFEINGNSALHYGRNSFSSYAIPISSRPFFGNVLNTRVIRKFQVYHARKLNFGPVMVSLNGGSNAGLVSDGLLPKELEFKPSFDQYLKAMESARTVRGKKHGAATTQKQKRMGKGGEGNKVKNFKRVGEKIDRKDGLVAAKEDVVLKVDEAFMYKEGSSTSNGKVRGKPFKGFKSEYDGKESKIDVKTKQKHGANIRQDGWLKRQSHSLEPESDDCSMIKSQGKSGSRRISNKIIRSNSNGSSGSVIERGVTHDLYSSKMSGDSRQRDRIRNTQGETPGADRIVGNKKVMDRGLVRRHTEIESLMNRNGQANVKVKLNGSRKPFLDRGYDSDNLEVERAAFKNLKDSNNVIGKPQFSHKEMEERIEKLAKSLNGADINLAEWMFSKMMRSAKLKFNDYSIRRIITILGNLGNWRRVIQVIEWLQKRERFKSHKLRHVYTAALDALGKSRRPVEALNVFHAMQQQMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKLKTGIFENWDPRLEPDIVVYNAVLNACVKRKQWEGAFWVLQQLKKQGLQPSAVTYGLVMEVMFSCGKYNLVHEFFRKLQKSSIPNSLTYRVLVNTFWKEGKTDEAISAVQEMETRGIVGSAALYYDLARCLCAAGRAHEALMQIDKICKVANKPLVVTYTGLMQASLDSGHIQDGAYIFEKMKEICAPNLVTCNIMLKAYLAHGMFQEAKELFEQMLENTNNPSASTDYKMRVIPDIYTFNIMLDACVAEKRWDYFEYVYQRMLYHGYHFNPKRHLRMILEASRAGKEGPLEITWKHLTATDRIPPAPLIKERFCAKLEKDDHVAALTCITNNPPKDLQPFSKSSWLNLFQENSQRFQKDTLVRLMNGASNIVSNSSMPNPILVYLMQSCKEFFLAPDFNAAHMDSVKNVFAVENKLEVVSSR. 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00338 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Seca6g00338 931 MobiDBLite consensus disorder prediction 264 279 - -
Seca6g00338 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Seca6g00338 931 MobiDBLite consensus disorder prediction 209 284 - -
Seca6g00338 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Seca6g00338 931 PANTHER OS01G0674700 PROTEIN 18 903 IPR044645 GO:0009658
Seca6g00338 931 SUPERFAMILY TPR-like 594 728 IPR011990 GO:0005515
Seca6g00338 931 MobiDBLite consensus disorder prediction 222 251 - -
Seca6g00338 931 Gene3D Tetratricopeptide repeat domain 590 653 IPR011990 GO:0005515
Seca6g00338 931 Gene3D Tetratricopeptide repeat domain 421 589 IPR011990 GO:0005515
Seca6g00338 931 Gene3D Tetratricopeptide repeat domain 654 808 IPR011990 GO:0005515
Seca6g00338 931 Coils Coil 362 382 - -
Seca6g00338 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Seca6g00338 931 FunFam Pentatricopeptide repeat-containing protein 367 513 - -
Seca6g00338 931 MobiDBLite consensus disorder prediction 101 125 - -
Seca6g00338 931 Pfam PPR repeat 441 467 IPR002885 -
Seca6g00338 931 Pfam PPR repeat 746 775 IPR002885 -
Seca6g00338 931 Pfam PPR repeat 596 625 IPR002885 -
Seca6g00338 931 Pfam PPR repeat family 523 567 IPR002885 -
Seca6g00338 931 Pfam PPR repeat family 696 735 IPR002885 -
Seca6g00338 931 NCBIfam pentatricopeptide repeat 526 559 IPR002885 -
Seca6g00338 931 NCBIfam pentatricopeptide repeat 699 727 IPR002885 -
Seca6g00338 931 NCBIfam pentatricopeptide repeat 746 772 IPR002885 -
Seca6g00338 931 NCBIfam pentatricopeptide repeat 441 474 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00338 Seca-Chr6 9879213 9888513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00338 523 754 Glycosyltransferase AT1G05670 23.504 3.74e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00338 - - aprc:113864568 1431.39