Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00302 ATGGCTGTTGAGACTTCTGATAAACCAAATATACCAGATTCTTTTGAAGATAATGATGGACCAATAACTTTCAAAAGGTACTCATCAGCTAAGAAAAATCAATCGCATTCAGAAGGAAGGAAGTCAACTTCTCTTAGTTATGATGGACAGTCATATAGAAAGACTTCTGATGTGCCTTCTTCAAATGGTCAAACTTCTACCATACAGAAAGGTAATATTGCCCCATCTGCTAAGGCATCACCCATGAAGGCTTCTGTAGGTATCTCAAAAGCATCAGATTCACGTGTCAACACCTCCCCTGTTAAGTTTCCTGTAGCAACCTCAAAATCACCTTCACCTTCATTAGGGGATAAACTAAAGCCTCTTTTGGAAAAGAAAATGCCCATTCATGTAAAGGAGGAAACGAAATCTATAAAAAATCGTGACGATTCAGAAGACGACGATGATGATAAACCATTGAGTGCTCGGTTGTTGAAGAACACTAACCATGGTAACAAAGTCATCCCTGTTGCTGTCAAGAAATCTTCAGTAGACTCTGATGATGATGATGATATCCCTTTGTCAGCAAAGATATTCCGGAATTCTAATTTGGGAACATCTAGCAGTAACTATGATGAATCTGATAAGAAGCCTATTTCAAAAGTTCAGAAAGAACGGCAAAATGGTTCTGGCACAGGTAATAAACAGGAAAGGCCATCTACACTGCCAGTTAAGAGACCACTAGATAATAGTAATTCCTTGCACTCTTCGTTTAAGAAATCAAAGGTCTCAGATTCAGCCGCATCAATCAAAACTAAGCAAGTCTCTGTGAAAAGTGAGGTAAAGCCAGAGGATGATGATGATGATGATGATATTCCTATTTCCCAGAGAATGAAGAAGCCAATCACATCAGCTAATAAATCATCTTCCACAAAGAAGGTGTTGACAAAGGTTACTAAAGTTACTAAGTCCGGTTCAACATCTTTTAAGAAACAGGCCAAGAACAAGTCAAAAAAGTCAGGCAGTGGTTCAGAATATTCCAAATCTACAAAACTTCTTCCTAGCTCTGGTGATGGACAGAAAAAATGGACTACATTGGTTCACAATGGTGTCATCTTCCCTCCTCCTTACCAGCCCCATGGGGTAAAGATGCTCTATAAGGGAAAACCAGTTGATTTGAATCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGTGATACAGATTACATGCTGAAAGATAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGTTAGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGTGACTTCACCCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAACAAATGACTACGGAGTTAACTTGCGTGGTTGTGATTCATGTCTTTTATTATTCAAGTATTGACCCTTTTTGTCTTCACTTTATGCAGGAGAAGAAGGCTCTGAAGGAAGAGAAAACAAAGCAAGAAGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAGGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCATCCCAAGATGGGAAAATTGAAAAAACGCATTCGTCCAAGTGATATCACAATTAATATTGGAAAGGATGCGCCAATTCCTGAATGTCCTATTCGTGGTGAAAGATGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTTTTGGAATGACCCAATCAATCCAAAGTTATTTAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAAGGTCAAAGCGACAAGGAAAAATATGAGAAAGCTAGGATGTTGAAGGATTACATAGGGAACATTAGGGCTGCATACACAAAAGATTTTACAAATAAAGATATTACAAAGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAAGCCCCAAACAAGTTGAAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGATAAACGCCCTGGTGATGATCTTTTTGACATGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCCGGCCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGATATGCTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCATGATGCACAAATGACAAGGTTAAATGAAAAGATTGATGAACTTCAGGCTGTTCTAAAGGAGCTGAAAACGGATTTGGACAGGGCAAGGAAAGGAAAGCCCCCTTCAAAGAGTTCAGATGGAAAGAGAAAGAAGAAGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAGATGCAACGTGATATGAAGACCAAGGAAGATCTTAAAACTGTGGCGTTAGGCACATCCAAGATAAACTACCTTGATCCCAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTCCTGGCAAAATTTACTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA 2754 0.3871 MAVETSDKPNIPDSFEDNDGPITFKRYSSAKKNQSHSEGRKSTSLSYDGQSYRKTSDVPSSNGQTSTIQKGNIAPSAKASPMKASVGISKASDSRVNTSPVKFPVATSKSPSPSLGDKLKPLLEKKMPIHVKEETKSIKNRDDSEDDDDDKPLSARLLKNTNHGNKVIPVAVKKSSVDSDDDDDIPLSAKIFRNSNLGTSSSNYDESDKKPISKVQKERQNGSGTGNKQERPSTLPVKRPLDNSNSLHSSFKKSKVSDSAASIKTKQVSVKSEVKPEDDDDDDDIPISQRMKKPITSANKSSSTKKVLTKVTKVTKSGSTSFKKQAKNKSKKSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLYKGKPVDLNPEQEEVATMYAVMRDTDYMLKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTELTCVVVIHVFYYSSIDPFCLHFMQEKKALKEEKTKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPIRGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAAYTKDFTNKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKRPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMTRLNEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKRKKKLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPDFRF. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00302 917 MobiDBLite consensus disorder prediction 292 324 - -
Seca6g00302 917 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 355 457 IPR008336 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 481 590 IPR008336 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 Gene3D Topoisomerase I; Chain A, domain 3 593 741 IPR014711 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 SUPERFAMILY DNA breaking-rejoining enzymes 593 914 IPR011010 GO:0003677
Seca6g00302 917 Coils Coil 791 825 - -
Seca6g00302 917 MobiDBLite consensus disorder prediction 119 156 - -
Seca6g00302 917 PANTHER DNA TOPOISOMERASE I 481 917 - -
Seca6g00302 917 FunFam DNA topoisomerase I 593 741 - -
Seca6g00302 917 MobiDBLite consensus disorder prediction 192 206 - -
Seca6g00302 917 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 353 592 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Seca6g00302 917 MobiDBLite consensus disorder prediction 817 842 - -
Seca6g00302 917 Pfam Eukaryotic DNA topoisomerase I, catalytic core 593 818 IPR013500 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 CDD Topo_IB_C 599 792 IPR013500 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 863 881 IPR018521 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 FunFam DNA topoisomerase I 742 917 - -
Seca6g00302 917 Coils Coil 837 864 - -
Seca6g00302 917 SMART topeu 519 890 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Seca6g00302 917 MobiDBLite consensus disorder prediction 217 269 - -
Seca6g00302 917 MobiDBLite consensus disorder prediction 90 114 - -
Seca6g00302 917 FunFam DNA topoisomerase I 442 590 - -
Seca6g00302 917 Pfam C-terminal topoisomerase domain 849 917 IPR025834 -
Seca6g00302 917 MobiDBLite consensus disorder prediction 39 74 - -
Seca6g00302 917 Gene3D - 742 917 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Seca6g00302 917 MobiDBLite consensus disorder prediction 1 352 - -
Seca6g00302 917 CDD Topoisomer_IB_N 355 591 - -
Seca6g00302 917 FunFam DNA topoisomerase I 370 454 - -
Seca6g00302 917 Gene3D DNA Topoisomerase I, domain 2 355 591 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 635 654 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 738 752 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 658 672 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 519 528 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 870 881 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 PRINTS Eukaryotic DNA topoisomerase I signature 680 696 IPR001631 GO:0003677|GO:0003917|GO:0006265
Seca6g00302 917 Coils Coil 476 496 - -
Seca6g00302 917 Gene3D - 371 454 IPR013034 GO:0003917|GO:0006265
Seca6g00302 917 MobiDBLite consensus disorder prediction 332 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00302 Seca-Chr6 7825439 7835101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00302 K03163 - gmx:100799837 1362.05