Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00299 ATGGCTACTGCAGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGAGTTCATCTTACTATTACTCTGATATTATAGAAAAGCTTTCTTATGGGAGTGATTTTGGGTCCACACACTATCAGATTGCTCCTACAAAATCTGTAATAATTGCCAAGAAGTCATCCAACTACACTCCAACTTTTCCAACATCTGATAGGCAGAATCAGTCCATCAAGGCTCTTAAGGAACATGTTGATGGTGCCCCTTCTGTTGCTGATGATCCATGGTTTCAGACATACAATTCTAATGACTTAGAGGTGGAAAGCTCTGACATGGATTATTCTGTGGAGGCTCTTCTTTTGCTGCAAAAATCAATGCTGGAAAAGCAATGGAACCTTTCATTTGAGAGGGAAGTGCTAACTGAGCAGTCAAGACCAGAAAAGAGCCGTAGGAAAGTGGCAGTGACTTGTTCTGGGGTGTCTGCAAGGCAGAGAAGAATGAATACCAAGAGGAAGATCCCTGGTAAAGTTGATTCTGCAATGATGCAACCTTGTGCTTCTGTGCAGCTGAGGTCCACGGTCAGTCCAGAACTGCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGGAATTGCTCTCTCATGCTGAAGTTGTAAGGCTATCAGAGAAAATAAAAGTTGGGCTATCCCTAGATGAGCATAAATCCAGACTGAAGGAAAGATTAGGATGTGAACCCTCTGATGATCAAGTTGCAACTTCATTGAAGATTTCTCGAGCTGAACTACGAGCAAAAATGATAGAGTGCTCTTTGGCAAGAGAGAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTGCTTCGTGGGATTGAAAAGTTTGATTCTTCAAAAGGATTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACATTAAGATTGCCAACTCATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGATTGGAAGAAAGAGGCATCACTCCAACTATTGATAGGATTGCAAAATGCCTTAATATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATCAGCAAAGTTTTCTCGCTTGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGAAACTCATCATAGTTATATTGCAGATAAGCGACTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATCAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATCCGTCTTTATTATGGACTGGATAAAGAATGTCTTACGTGGGAAGACATTAGTAAAAGGTGA 1431 0.4116 MATAAVIGLSGGKRLLSSSYYYSDIIEKLSYGSDFGSTHYQIAPTKSVIIAKKSSNYTPTFPTSDRQNQSIKALKEHVDGAPSVADDPWFQTYNSNDLEVESSDMDYSVEALLLLQKSMLEKQWNLSFEREVLTEQSRPEKSRRKVAVTCSGVSARQRRMNTKRKIPGKVDSAMMQPCASVQLRSTVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSEKIKVGLSLDEHKSRLKERLGCEPSDDQVATSLKISRAELRAKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKFRLEERGITPTIDRIAKCLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADKRLENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKR. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00299 476 Gene3D - 343 393 IPR036388 -
Seca6g00299 476 ProSitePatterns Sigma-70 factors family signature 1. 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 Gene3D - 427 476 IPR036388 -
Seca6g00299 476 NCBIfam sigma-70 family RNA polymerase sigma factor 268 475 IPR014284 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 Gene3D RNA Polymerase Primary Sigma Factor 69 342 - -
Seca6g00299 476 Pfam Sigma-70 region 2 274 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 344 400 IPR013324 -
Seca6g00299 476 PRINTS Major sigma-70 factor signature 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 PRINTS Major sigma-70 factor signature 469 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 PRINTS Major sigma-70 factor signature 320 328 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 PRINTS Major sigma-70 factor signature 449 461 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca6g00299 476 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 115 475 - -
Seca6g00299 476 Pfam Sigma-70 region 3 351 421 IPR007624 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00299 Seca-Chr6 7762743 7768337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00299 K03086 - gmx:100801884 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00299 6 7762743 7768337 Seca6g00299 6 7762743 7768337 ECH