Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00261 ATGAGTGATTCTAAGCAGATGCTACTGTTTGGGTCATTTACTGAAGATGAAACCAAATCATTGCTGCATAAGCAATCTTCTGGGAAAAATGAAAAGCCTGTGGAGAAGAACCAACTGCAATTCGGCTCTTTGAATTCTGTTACTGTTAATTCATCAAAAGCACCGGATAGTGTTCCTCCTGTTGATACTCAGAAATGTAATGGAGTGAGTGTCAGTGATAATTTAGCCAAAGTATCACAAACTGTAAAAGAGAATGGCAGCATTACCCATTTCTCTGTTAGTCCCTCAAGTGTCCTTAGTGCAAACCAAGTTGAAGAAAACAATGTGTTATCAGTTACACTACTTGATGAGGATGGTCCCTCGAACCAATTTACAAATTTGAGCCTGGATGCTTCTGAGGCTGAAATCTTGAAGAATGTACATAGCGCTGGCAGTGGTGATTATTCTTCATCAAAATTATCTGATCAAGACTCAAAAAAGGCACCTAATGGTCATGCTGTTATGCATGTTAAGGATCTTCTGCCTCGAGGCCTTATTAACTCTGGGAATCTATGCTTTCTTAATGCAACCATGCAGGCTCTATTGTCCTGCACTCCTTTTGTTCAGCTTTTGCAGGAATTAAGAACTCGCAACATTCCTAAGGTTGGCTATCCCACGATGACAGCATTTGCTGAATTCATAACTCAATTTGACATGCCAAGCGGAACAAAATTAAAGCAAGATGCAGATTCTTTTGAGTATGGAAGGGCATTCTGCCCCGTTATGTTTGAAGGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAACTATTGAAGCTTGAAGGACAGTCTTCAATTCTTAATGGTAGCAAATCTTCTCTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTAACAAGGACTCAAAGCTTCGTTCCATCAGAATTAAGTGGTATATTTGGAGGACAACTCAGAAGTTTGGTTAGAGCTAAAGGAAATAGAGCTTCTGCCACAGTTCAACCATATCTATTGATCCATCTTGACATTCATCCTGATGCTGTGCATACAATTGAGGATGCACTTCACTTGTTTTCCGCCCCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGGAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAAATACAGACACTTCCAAAAATAATGATATTGCACCTGATGCGTTTTGGCTATGGAAGCCAGGGAAGCACCAAGTTGCATAAACCTGTGCACTTTCCTCTTGAGTTGGTATTAGGTCGTGACTTGCTTGTTTCACCATCTACTGAGGGTCGAAAATATGAACTTGTGGCTACAATTACTCATCACGGAAGGGAGCCTTCAAAAGGGCACTACACAGCTGATGCCCTGTACCCCAATGGTCGGTGGCTACGATTTGATGATGCATATGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAGGCATACGTCCTTTTCTACAAACAGATATGA 1587 0.4115 MSDSKQMLLFGSFTEDETKSLLHKQSSGKNEKPVEKNQLQFGSLNSVTVNSSKAPDSVPPVDTQKCNGVSVSDNLAKVSQTVKENGSITHFSVSPSSVLSANQVEENNVLSVTLLDEDGPSNQFTNLSLDASEAEILKNVHSAGSGDYSSSKLSDQDSKKAPNGHAVMHVKDLLPRGLINSGNLCFLNATMQALLSCTPFVQLLQELRTRNIPKVGYPTMTAFAEFITQFDMPSGTKLKQDADSFEYGRAFCPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSILNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLIHLDIHPDAVHTIEDALHLFSAPETLEGYRTSLTGKAGVVTARKSVQIQTLPKIMILHLMRFGYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADALYPNGRWLRFDDAYVFAIGTNKVLHDQAYVLFYKQI. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00261 528 FunFam Ubiquitin carboxyl-terminal hydrolase 167 527 - -
Seca6g00261 528 MobiDBLite consensus disorder prediction 20 42 - -
Seca6g00261 528 SUPERFAMILY Cysteine proteinases 172 526 IPR038765 -
Seca6g00261 528 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 176 528 IPR028889 -
Seca6g00261 528 Gene3D Cysteine proteinases 163 527 - -
Seca6g00261 528 MobiDBLite consensus disorder prediction 143 157 - -
Seca6g00261 528 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 177 192 IPR018200 GO:0004843|GO:0006511
Seca6g00261 528 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 470 488 IPR018200 GO:0004843|GO:0006511
Seca6g00261 528 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 29 528 - -
Seca6g00261 528 MobiDBLite consensus disorder prediction 143 164 - -
Seca6g00261 528 Pfam Ubiquitin carboxyl-terminal hydrolase 177 525 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00261 Seca-Chr6 6475561 6480788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00261 173 528 Miscellaneous Gene Families AT2G24640 28.767 5.62e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00261 K11841 - gmx:100816791 870.922