Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00251 ATGGATGGTTATGAAGCAACAAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGAGTGTGCTTCTAATTCAGGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCTGAAGCCTTAGTTCACTCTGTGATTCTCAAAGCTCGCAAGGAGTTAGGATTACCCTCGAACTCTCCGCCAACACCTTCTACTCCTCCATCTCCATCCCCTTTCCTTTCAAGGCAAAATTCCACTTCTTCTTCAAGGCTTAGTGGAATCAACCTTCCTCATGCTCTTACTATCCCAAACCCTTCTTCTACTTCAGCTTCCCCTGATGATTTGATGAGCCCCAACAACTTGGTTGTTGGTTCTTCTACTTCATCTTCTTCCTTGCCCTTCTATGCAAATGGGGCATCAGATCCAATAGATGATTTCCAGATTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACACTTGGCCACAACAAGAACCTTGATTTGTTTTACCCTCCTCCTCACTCTGACTTGTCTTCAAGTCCCACTGCTGGTGCTGACCCATCTCTCTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCACAGGAGAAGTTGCTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCAAATTCTGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACTAGTTGTAGGTTCCTTCATGGAGGACTTGGAGATGGTGATGGTATTGCAATTGTTGGGTCTCCAAACAAGATTGAGATGATGGATCAGTGCCATGAGCTCTTCAGATCTAAGTCTGCTCAACAACAACAACAACAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCTCTTTTCCATACTCACCAAAGTGCATGAATTTCCTCTTACAGCAGCAACAAAATGATACTCAAAGAGCGGCAACTGCAGCTCTTATGATGAGTGAGGATTTGCACAAATATGGAAGATCCAGGCTTGAAAGGAGTGATTTTTCTTTGAATAGTCTTGGAATGGTCAACCCAGCTTCCAGGCAGATCTACTTGACCTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGTATTTATGGTCCTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGTATGTTTGGCTTTGTCACCTTTGTTTATCCAGAGACTGTGAAGCTCATCCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCTCGAGTTCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTTCCAGACAAGTACAGGAAACAGCAACAACAGGTAGAAAGGGGAGATTTTTCACCTTGTGGTACTCCCACTGGACAAGATGCTAGAGACCAATATGATCTTCAACTTGGTAGGTTCCATTCTTCATTTTATTGTCTTTTCAGTTTGTGTGCTAGTCAAACCTACCCTCTACTCCCCCTTAACATATGTGGCATGTCTTGTATGTTCTTAGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATCTGCAGCAAGCTCTTGAGCTTCAAAGTAGGAGGTTGATGGGTCTGCAACTTCTTGACATCAAGAAGCAACACCACCGTGCTCTTTCCACAGGAAGTCCAATTCCTTCCCCTACACACTCTCCTAATATGTTCAATCAGAATCTTGTTCTTCCTTCATTTCATAGAAGCTCAGAGGCTTTAGAGGAGAGTGGTTTAGGTTCTGCTCCAACTAGTACTGCACCAGTTTCTGTTGGTCAGCAGCCAGTCAACAACATTTCTGTTGGCAAGGAAGTGGTGGTCAATGGGGAGAATAATGGATATAGTGAACGCAATAGCAATGGCAATGGCAAGCTGAGTTCCAGTCATGAAGATGGGGATTTGCAAGAATGTTTGGAGCATAATCTTCCTGATAGCCCTTTTGCTTCTCCCACAAAAGCTGGTGGTGTAGATCACGTGGCTCCATTCTCTAATGGACCTAATGAGGTCATTGATTCAGATGCCTCAGCTGCATCTGCCAACTCTAAATTTGGTACTAACACACCACCAGCAGCAGCATCTGCTCTAGACATAGGGTCTTTCAAATCCTTTAACTGCCAAATGCCCAGGTTCTCTTCTGGACATGGAACTATTGGGATGTTTGCTGGCACTGGTGGACCGATTGGCATTTAG 2229 0.4437 MDGYEATRIVFSRIQNLDPENASKIMSVLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQNSTSSSRLSGINLPHALTIPNPSSTSASPDDLMSPNNLVVGSSTSSSSLPFYANGASDPIDDFQIQDQLSFLNDGSPTLGHNKNLDLFYPPPHSDLSSSPTAGADPSLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDGDGIAIVGSPNKIEMMDQCHELFRSKSAQQQQQQRLAAASQLMASSSFPYSPKCMNFLLQQQQNDTQRAATAALMMSEDLHKYGRSRLERSDFSLNSLGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERGDFSPCGTPTGQDARDQYDLQLGRFHSSFYCLFSLCASQTYPLLPLNICGMSCMFLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHHRALSTGSPIPSPTHSPNMFNQNLVLPSFHRSSEALEESGLGSAPTSTAPVSVGQQPVNNISVGKEVVVNGENNGYSERNSNGNGKLSSSHEDGDLQECLEHNLPDSPFASPTKAGGVDHVAPFSNGPNEVIDSDASAASANSKFGTNTPPAAASALDIGSFKSFNCQMPRFSSGHGTIGMFAGTGGPIGI. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00251 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 433 IPR000504 GO:0003723
Seca6g00251 742 Gene3D - 217 316 - -
Seca6g00251 742 MobiDBLite consensus disorder prediction 623 641 - -
Seca6g00251 742 CDD RRM_AtC3H46_like 359 428 IPR034365 -
Seca6g00251 742 MobiDBLite consensus disorder prediction 623 644 - -
Seca6g00251 742 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 364 435 - -
Seca6g00251 742 SUPERFAMILY RNA-binding domain, RBD 369 452 IPR035979 GO:0003676
Seca6g00251 742 MobiDBLite consensus disorder prediction 79 123 - -
Seca6g00251 742 SMART rrm1_1 358 428 IPR000504 GO:0003723
Seca6g00251 742 MobiDBLite consensus disorder prediction 586 607 - -
Seca6g00251 742 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Seca6g00251 742 MobiDBLite consensus disorder prediction 61 123 - -
Seca6g00251 742 SUPERFAMILY CCCH zinc finger 225 247 IPR036855 GO:0046872
Seca6g00251 742 MobiDBLite consensus disorder prediction 438 459 - -
Seca6g00251 742 SMART c3hfinal6 224 248 IPR000571 GO:0046872
Seca6g00251 742 Gene3D - 356 454 IPR012677 -
Seca6g00251 742 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Seca6g00251 742 MobiDBLite consensus disorder prediction 590 607 - -
Seca6g00251 742 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 666 - -
Seca6g00251 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 414 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00251 Seca-Chr6 6187194 6190656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00251 - - gmx:100801807 1115.14