Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00183 ATGAACGCACCTGATCGTTACGAGCGTTTCGTCGTCCCCGAAGGCACCAAAAAGGTTTCTTATGAGAGGGACACCAAGATCATCAATGCGGCATCTTTCACCATTGAGAGAGAGGACCACACTATCGGCAACATCCTTCGCATGCAGCTGCACAGAGACCCCAACGTGTTGTTCGCTGGATACAAGCTTCCTCACCCTCTTCAGTACAAAATTATTGTCAGGATACACACCACTAGTCAGTCTTCGCCCATGCAGGCATATAACCAGTCTATTAATGATCTGGACAGGGAACTTGATCATTTGAAAAGCGCCTTTGAGGCAGAGATGTTGAAGTTTTCAAGGGACTATTGA 351 0.4701 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00183 116 Hamap DNA-directed RNA polymerase subunit Rpo11 [rpo11]. 23 105 IPR022905 GO:0003899|GO:0006351
Seca6g00183 116 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 31 103 IPR009025 GO:0006351|GO:0046983
Seca6g00183 116 Gene3D - 1 115 IPR036603 GO:0006351|GO:0046983
Seca6g00183 116 FunFam DNA-directed RNA polymerase II subunit RPB11-like protein 1 115 - -
Seca6g00183 116 Coils Coil 84 104 - -
Seca6g00183 116 SUPERFAMILY RBP11-like subunits of RNA polymerase 1 111 IPR036603 GO:0006351|GO:0046983
Seca6g00183 116 CDD RNAP_II_RPB11 13 105 IPR037685 GO:0001055|GO:0005665|GO:0006366
Seca6g00183 116 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 35 66 IPR008193 GO:0003677|GO:0003899|GO:0006351
Seca6g00183 116 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00183 Seca-Chr6 4541703 4544334 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00183 K03008 - gmx:100527865 235.343