Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00176 ATGGGATTTGATAACGAGTGCATAGTGAACATCCAATCTCTTGCTGGAGAGTACTTCTGTCCTGTTTGTCGCCTGCTTGTATTTCCAAATGAAGCTTTGCAGTCACAATGTACTCATTTATACTGCAAGCCGTGTTTGACGTACGTAGTGAGCACTACGAGGGCTTGTCCTTATGATGGTTATTTGGTGACTGAGGCGGACTCTAAGCCTCTGATGGAATCAAACAAGGCACTTGCTGAAACTATTGGAAAAATACCAGTTCATTGCCTATATCATAGGAGTGGATGCACATGGCAAGGAACTTTGTCTGAGTGTACAACTCATTGTTCTGGGTGTGCTTTTGGCAGTTCTCCTGTTGTTTGCAATAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAACATGCACAAAATTGTCCTGGTGTGCAAGGTCAGGTGCAACAGGTGGCCGTTACCCAGGATCCTGCATCCACTAGTGCTAGTGCTTCTACTGATCAGGACCAGGCTGCTGCTCCAGTTGGAGCAACGGCTTCACAAGCTTTGACTTCTCCAACTGTTGTTACTAATACTACACCTGGGCAGGCTTCAAATCAGCTACCCAACCAAGCTTCTCAAACTCAAGCTTTAGCTCAAACTGCTGTGCAGCCAACGGCAGAGCAATGGTATCAACAGCAACAATATCAACAGTATTACCAGCAATACCCTGGACAAGATCCATACCAACAGCAGTATCAACATTACTACCCCTATCAACAGTCCGTAGTTCCACAATACCAGCAGGCCTATGGCCAACCCCAACCTCAGTCTCTTACACAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAATCTCAACCCCAACCCCAACCCCAACCCCAACCCCAGCCACAAGCCCCACACCAATCACAGCCTCAACCACAACCTCAGGCCCAAGGACTGTCTCAACCACTTTCACATGTTCAGGCTCCTGTGGTCCCACAATCTCAGAATCAGATGCAAGTTCACCAGCAACCACAGCAGCTTCAACCTGCTGTACAGCCACATGGTCAGATGAGTCACCCACCTGGCCACAATCAAGCTGTCCCTCCGTCTCAGCCTCAGCCTTATCCTTATGCCCAAGTTCAGCCTCATTCTGTCCAACAACCCCAACCACAACCAAATATGCAAATGCCTCCTTATCAGCAGCCTCAAATTCAACAACCAGTTCAGAAGTACCCTGCTCCTCAACCTCAAGTTCATCAACAACTGCAACCTAATGCTCCAGTTCAACATCTTTCTCAGCCCCAGATGCATCCTCACCAGCCTGTGATGCCTAATGTTCAGCCTCAAGTGCAAAATCAACCATCACATTCAGTGACGGGTCATCACTCTTATCCTCAACCTCTGCCTCACCAGAATACACAACCACTAGGCTCTCAACATACTATGCACATGCATCCTCAAAGTGGGCCTCATCTCCAGGCACAGCATTCTGTTCAAATGCAGAATCAGTTTCCTCAGAAAATGCCGGTGATGCGTCCAAACCAGTCTCATGCTATGTTTCCTAACCAGCAACAACATCAACCTGTTCAGGGTCAAAGCGCCCCTCCTTTGCAACAGCAGCCTGTATATCCCCATAATCAACAAGCTGGACAAATCAACCAACGTCCTACTCTGCAACCAGTTCAACAAACGTTGCCACAACAACCATTTCCACAACACCAGATGCCTATGCCGTCTCATTTACAACCCCAAGGTCCAGCACATTCATTTCCCAAGCATGCTTATCAGCAGTCACAGGGTAATACTGCACTATCAAATAGCACTCAGCACAGTCAATCTCAAAATGCTGTAGGAAGGCCTTCAGTTCCCAATCATGCAGGACAAGTACACCCATTTGCTCAATCTGCCAATACCTTTCCAGTTAGACCTGGGCAAAATGGTGCTAGTTATCTGCCTGAAAATCAGAATTTGTTGGTTGGGACCAATAGTCAAGTACAGTTGTCTTCTGAATTGCCATCTAGGGCACCTGAAGCAATTGAAAGACAAGGTAACGTCATTGAGCAACAGACTGACTCTGCCTCTGGAAAACATGGTAAAAATTTGAAGGATTTGGACACAGTGTCTGGATCAGCAAATGAGTTGAAATCTGAAAAGGACACAGATGTGAAACCAACTGAGGTTACTAAGCAAAATAGTGAAGATTCACACTCTATGACGACTTTAGGCCCAAATGCACATGCATTAGAAAATGGTGATTTAGTGAATAAGAATCTTGGGAAGGGAGAGGCTGCTGAAAGTAATGAGCTTCCTGTTGTCCAAGGCAATGAGGTTCAAGATGGACCTCCGCTGAAGACAGAGACAAAACTCTCTGAGTCTGAATCTGATAAACTGCACAGTGATGTTACATGTGCCCCAAGACCTTCTGTTGCTAGCAATCCAGCACCACCTGTCTCCCTAACCGATGGCAGTCAAGGACCTGGCATTGGTGAATACAGAGGGATGAAGTCTGGGGGTTTCGCCCAGCCGTCTCATCCAGCTCCTTTTACTGATCAGGATAGGCATCAGCAACCAATGATTAGTTATAAGCCTGCTGCTGTCGAGCAAAGGTCTTCTGCAATGTTAGCATCACAATCACTGCATCCGGCAGTTCCACATCAGCCACTCTCTGCAGGGAACTCTTCAAATCTTCTTAGGAACCATGGATCTGCCCCTGGTCTTCATTCAGGACAGCCCTTGAACTCAACAGAGAATTTTCAGCCAACCATGTTCAAGCAACCTCAGCCCCTTGGACCCCTGGGGCCATATAACCAAGTCCATGAGCCTCCCTTCCATGCTGGAGCGTCGAATTTGTCTCGTATTGGAGGGCCACAATTTGGTGCACCACCTCCTGGAGATATGCATGGTGGAATGACAGCCAACTTACCACCACATGCTCCTGAAGGTTTTGGTTTGCAGGATGAAAGGTTCAAATCTTTCCAGATTCCAAGTCAACAAAATATTGATCGAAGAGAGTTTGAAGATGATCTCAAGAAATTCCCCAGGCCACCTTTTGATGCTGACCCAGTTTCTAAATTTGGAAATTTTCCATTAGGTCCACATGAAGCTGGAAAGAAACCGCTTGGTTTTCATGAGGATGCCATTATGAAATCAGGTTCTACTCTTCATCCTGGTTATGTTGGACTAGGTCCTGGATATGGGAGACATCGGATGGATGGTATGGCTCCGAGAAGTCCTGTTAGTGAATATACTGAGATGTCTTCTCGGAGATTGGGTCCTCTCTCTGGTAGTCTTGTTAGTAAGTCAGGTATTGATGATTTTGATGGCAGAGCTGCAAGTCGTTTTGGTGAGTCAGTTGGCATTGCAAATACATTCCGTGATAGTCGGTTTCCTCATCTACCTAGCCATTTGCACAGAGATGAGTTTGATGGTTTTGGTAACTTTCGAATGGGTGAACATCCAAGGAGTGGTGATTTCATTGGTCAAGATGAATTTGGTGGCCATTTTCGAAGGGGTGAACGTTTGGGTCCGCATAATTTTCCTAGACATTTGCAGCTTGGGGAACCTATTGGTTTTGGTGCCCATCCTGGTCATATGCGAGCAGTTGAACTTAGTGGTTCTCGGAGTTATGAATCTTTCAGTAAAGGCAACAGGCCGGGTCATCCACAGCTTGGTGAGCCTGGGTTCAGGAGCAGCTTTTCCCTTCCAGGATTTCCTAATGATGCTGGATTTTTAACAGGAGATATCAGGTCATTTGATAATTTGAGGAGAAGGAAGGCTGCTAGCATGGGGTGGTGCCGTATATGTAAAGTTGACTGTGAAACAGTTGAAGGTTTGGACTTGCATTCTCAAACAAGGGAGCACCAGAAGATGGCCATGGATATAGTTAAAACAATCAAACAAAATGCAAAGAAACAAAAATTAATACCCAGTGAACAATCCTCAGTTGAAGATGGAAACAAGAAACGGAATGCTGGTTTTGAGGGTCGTGGAAACAAGCACTGA 3984 0.4651 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTRACPYDGYLVTEADSKPLMESNKALAETIGKIPVHCLYHRSGCTWQGTLSECTTHCSGCAFGSSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQVQQVAVTQDPASTSASASTDQDQAAAPVGATASQALTSPTVVTNTTPGQASNQLPNQASQTQALAQTAVQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQSVVPQYQQAYGQPQPQSLTQPQPQPQPQPQSQPQPQPQPQPQPQAPHQSQPQPQPQAQGLSQPLSHVQAPVVPQSQNQMQVHQQPQQLQPAVQPHGQMSHPPGHNQAVPPSQPQPYPYAQVQPHSVQQPQPQPNMQMPPYQQPQIQQPVQKYPAPQPQVHQQLQPNAPVQHLSQPQMHPHQPVMPNVQPQVQNQPSHSVTGHHSYPQPLPHQNTQPLGSQHTMHMHPQSGPHLQAQHSVQMQNQFPQKMPVMRPNQSHAMFPNQQQHQPVQGQSAPPLQQQPVYPHNQQAGQINQRPTLQPVQQTLPQQPFPQHQMPMPSHLQPQGPAHSFPKHAYQQSQGNTALSNSTQHSQSQNAVGRPSVPNHAGQVHPFAQSANTFPVRPGQNGASYLPENQNLLVGTNSQVQLSSELPSRAPEAIERQGNVIEQQTDSASGKHGKNLKDLDTVSGSANELKSEKDTDVKPTEVTKQNSEDSHSMTTLGPNAHALENGDLVNKNLGKGEAAESNELPVVQGNEVQDGPPLKTETKLSESESDKLHSDVTCAPRPSVASNPAPPVSLTDGSQGPGIGEYRGMKSGGFAQPSHPAPFTDQDRHQQPMISYKPAAVEQRSSAMLASQSLHPAVPHQPLSAGNSSNLLRNHGSAPGLHSGQPLNSTENFQPTMFKQPQPLGPLGPYNQVHEPPFHAGASNLSRIGGPQFGAPPPGDMHGGMTANLPPHAPEGFGLQDERFKSFQIPSQQNIDRREFEDDLKKFPRPPFDADPVSKFGNFPLGPHEAGKKPLGFHEDAIMKSGSTLHPGYVGLGPGYGRHRMDGMAPRSPVSEYTEMSSRRLGPLSGSLVSKSGIDDFDGRAASRFGESVGIANTFRDSRFPHLPSHLHRDEFDGFGNFRMGEHPRSGDFIGQDEFGGHFRRGERLGPHNFPRHLQLGEPIGFGAHPGHMRAVELSGSRSYESFSKGNRPGHPQLGEPGFRSSFSLPGFPNDAGFLTGDIRSFDNLRRRKAASMGWCRICKVDCETVEGLDLHSQTREHQKMAMDIVKTIKQNAKKQKLIPSEQSSVEDGNKKRNAGFEGRGNKH. 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00176 1327 MobiDBLite consensus disorder prediction 392 490 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 680 745 - -
Seca6g00176 1327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 119 IPR013083 -
Seca6g00176 1327 CDD RING-HC 18 57 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 271 303 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 561 623 - -
Seca6g00176 1327 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 759 847 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 515 546 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 585 615 - -
Seca6g00176 1327 SUPERFAMILY RING/U-box 13 73 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 154 178 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 304 347 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 1309 1327 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 706 724 - -
Seca6g00176 1327 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 863 946 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 261 490 - -
Seca6g00176 1327 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1028 1326 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 780 794 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 1295 1327 - -
Seca6g00176 1327 SUPERFAMILY TRAF domain-like 84 140 - -
Seca6g00176 1327 MobiDBLite consensus disorder prediction 881 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00176 Seca-Chr6 4424880 4433070 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00176 - - gmx:100814877 1363.59