Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00149 ATGTCGTTTCAGTTGGAAAACCAGAATCAGAATCAGAACCCTAACCCTAACCCTAACATCTGTCATAGTCCTTCATTGAAGAAGAGAGGACGCAGGTGGTCTGATATCTGGCTGAAGCACACCAAATCGAAGCCTCTGAACCCCATGGTTTTGGCAATGCAGCTTCACTCCCTTTCTCCTCGCAAAGCCAACAACAACAACAACCCCTTAATCCCCAATTTCTCCTCCTTCATAGACCGAACTCTTCTATTGTCTGATGAGCTTCTTCTCAAGATCCTCTCCAAGCTTCCAGATTCTCTGACTCAGAGGAACTCAAACTCCCTCGTTTGCAAGCGTTGGCTCAATCTCCAGGGTCGTCTCGTTCGCTCCCTCAGGATATTGGATTGGAATTTCCTCTTATCTGGTAGGTTGATTCATAGGTTCCCCAATCTCAACCATGTTGATTTGGTTCCTGGGTCTTTGATTTGCACCCAAAGTTCCAGCATTTTGCTGAGTAACCGCGTTTTGTCCATGCATATTGATTCTGGGTCTTCCCCAAATTGGTGTTTTTGTGAGGAGAATATGCTCCCTGTTGAGGTCATTGATCATGGGCTCAGTGCCCTTGCTAGTGGGTGCCCCAATTTGCGTAGGGTTCAGGTCATTGGTGCCAGCGAGATGGGTTTGCTCAGTGTGGCTGAGGAGTGCCCCACCTTGCAAGAATTGGAACTGCAGAAGTGCAGTGACAATGTGCTGCGTGGGATCGCAGCATGTGGGAACCTGCAAATCTTGAAATTGGTTGGGAATGTTGATGGATTCTACAATTCTGTGGTTTCTGATATTGGGTTGACCATTTTGGCTCAGGGTTGTAAGAGGCTGGTGAAGCTGGAGCTTAGTGGGTGTGAAGGGAGCTTTGATGGGATTAAAGCAATTGGTAAGTGCTGTCAAATGTTGGAGGAGTTGACCTTCTGTGATCATAGGATGGATGATGGGTGGCTAGCTGCTCTCTCATATTGTGATAATTTGAAGACATTGAGGTTCCAGTCTTGTAAGAGAATTGATCAGAATCCAGGACTAGAGGAGTATTTGGGTTCTTGTCCAGCACTTGAAAGGCTTCATTTGCAGAAATGCCAATTGAGGGATAAGAAGAGCATTGCAGCTATGTTTTCTGTATGCAGGGCTTCCAGGGAGATTATTATTCAGGACTGCTGGGGATTGGATAACAGCATGTTCAGTTTTGCAATTATTTGCAGGAGGGTAAAGTTGTTTTACTTAGAAGGATGCTCATTGCTAACAACAGAAGGTTTGGAGTCTGTAATTCATTCGTGGAAGGAGCTTCAGAGCCTTAGAGTAGTCTCATGCAAGAATATAAAGGATAGTGAAATCTCTCCTGCACTAGCAACCTTATTTACCACTCTCAAGGAATTGAGATGGAGGCCAGATACCAAATCACTCCTTCCATCAAGTCTTGTGGGGATAAGCATGGGAAAGAAAGGTGGCAAATTTTTCAAAAGGACATGA 1497 0.4522 MSFQLENQNQNQNPNPNPNICHSPSLKKRGRRWSDIWLKHTKSKPLNPMVLAMQLHSLSPRKANNNNNPLIPNFSSFIDRTLLLSDELLLKILSKLPDSLTQRNSNSLVCKRWLNLQGRLVRSLRILDWNFLLSGRLIHRFPNLNHVDLVPGSLICTQSSSILLSNRVLSMHIDSGSSPNWCFCEENMLPVEVIDHGLSALASGCPNLRRVQVIGASEMGLLSVAEECPTLQELELQKCSDNVLRGIAACGNLQILKLVGNVDGFYNSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGKCCQMLEELTFCDHRMDDGWLAALSYCDNLKTLRFQSCKRIDQNPGLEEYLGSCPALERLHLQKCQLRDKKSIAAMFSVCRASREIIIQDCWGLDNSMFSFAIICRRVKLFYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDSEISPALATLFTTLKELRWRPDTKSLLPSSLVGISMGKKGGKFFKRT. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00149 498 PANTHER UNCHARACTERIZED 83 457 - -
Seca6g00149 498 Gene3D Ribonuclease Inhibitor 298 477 IPR032675 -
Seca6g00149 498 Gene3D Ribonuclease Inhibitor 80 297 IPR032675 -
Seca6g00149 498 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g00149 498 SUPERFAMILY RNI-like 266 468 - -
Seca6g00149 498 SUPERFAMILY F-box domain 82 143 IPR036047 GO:0005515
Seca6g00149 498 SUPERFAMILY RNI-like 126 261 - -
Seca6g00149 498 MobiDBLite consensus disorder prediction 1 25 - -
Seca6g00149 498 SMART LRR_CC_2 358 383 IPR006553 -
Seca6g00149 498 SMART LRR_CC_2 409 434 IPR006553 -
Seca6g00149 498 SMART LRR_CC_2 228 250 IPR006553 -
Seca6g00149 498 SMART LRR_CC_2 282 306 IPR006553 -
Seca6g00149 498 FunFam F-box protein At5g51380 77 346 - -
Seca6g00149 498 FunFam F-box protein 347 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00149 Seca-Chr6 3761871 3764415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00149 K10268 - gmx:100812193 778.089