Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00116 ATGGAGGCCAACAACAACCATGATCTTGAGCATGCTCCCTTGCTGGATCCTCCTTCCCCAAATGCCCAGAGATCAAAGGGTAAGGGTAAGGGTACCCTTGTGATCATTGCCTCCATCATATTCCTATTGGCAATGGTTGCACTGATCATAAGCCCCTTAGAGATGAATATTCCTCATGAGCAGAACAATCAGATACAGGCTAGAGCTAGAGGGGTTGCTGAGGGGGTTTCAGCCAAGTCAAATCCATTTCTTTCCCAGCAACCTTCATATAATTGGACAAATGCCATGTTATCTTGGCAAAGAACAGCTTTCCATTTTCAACCTGAAAAAAATTGGATGAACGGTCCATTGTTTCACATGGGATGGTACCATATATTTTACCAATACAATCCTGATTCAGCTGTGTGGGGAAACATAACATGGGGCCATGCTGTCTCAAGAGACTTGATTCACTGGCTCTACCTTCCCATTGCCTTGTTCCCAGATACGTGGTATGACATCAACGGTGTATGGTCAGGTTCCGCCACACTTCTGCCAGATGGCAAAATCATAATGCTCTACACAGGTGATACCGATCAATATGTGCAGGTCCAAAATCTTGCATACCCCGCCAACCTATCTGATCCCCTCCTCCTTCATTGGGTCAAATATCCTAACAACCCAGTCTTGGTGCCTCCACGAGGCATTGGTTCAAAGGATTTTCGTGACCCCACCACTGCATGGTTTGGGCCAGATGACAAGTGGAGGGTCACGATTGGGTCAAAAGTCAACAAGAACAAAACAGGTGTTTCCTTGGTTTATAAAACCAAAGATTTCATCCACTATGAGCTCAATAATCACTTTTTGCATGCGGTTCCGGGTACGGGTATGTGGGAGTGTGTGGATTTTTACCCGGTTTCGGTGATCGGGTCTAATGGTTTGGATACATCGGTAAATGGGCCTGCGGTGAAACATGTGTTAAAGGCTAGTTTGGATGACACGAAGGAGGATCATTATGCAATTGGGACATACTTCATTGAGAATGACACATGGGTGCCCGATAACCCGCTTGAAGATGTGGGTATCGGGTTGAAATTGGACTATGGGAGATACTATGCGTCAAAGACATTTTATGACCAACACAAACAGAGAAGGGTCCTGTGGGGATGGATTAATGAATCAGATAGTGAAGTTGCTGACTTGAAAAAGGGTTGGGCGTCTCTTCAGACTATTCCAAGAACAGTGGTGTTTGACAAGAAGACTGAAACTAATGTGCTTCAGTGGCCAGTAGAAGAAGTGGAGAGTTTAAGACTAAGCAGTGCTGAATTTGAAGGAATTGTGGTTAAACCAGGCTCAGTTGTGCCCTTGGAAATTGGTCCAGCAACACAGTTGGACATATTTGCTGAATTTGAAATAGAATTGCTGGCATCTGAAGGGATTGGGAATGGGAATGACAATGTAGGTTGTGGAGAAGGAGCTGTTGATAGAAGTGCTTTGGGACCATTTGGCATTTTGGCTATTGCAGATGACCAACTTTCTGAACTAACACCAATTTATTTCCGTCTTTCTAGTGCTAGAACTGGCAGTTCAACCACTTCCTTCTGTGTTGATGAAACTAGGTCATCAAAGGCTCCTGATGTTTCAAAGCTTGTTTTTGGAAGCAAAGTGCCTGTTCTCAGTGGTGAAAAATTATCAATGAGGGCATTGGTTGACCATTCAATCATTGAGAGCTTTGGTCAAGGAGGGAGAACTGTGATCACATCTAGAGTTTATCCAACAGAAGCAATATATGGAGCTGCAAGATTATTTCTTTTCAACAATGCAACTGACATAAACATCAAGGCCTCACTCAAGATTTGGCAATTGAACTCTGCTTTTATTCGCCCCTTTCCCTTTGGTCAGAGTCAATGA 1890 0.4397 MEANNNHDLEHAPLLDPPSPNAQRSKGKGKGTLVIIASIIFLLAMVALIISPLEMNIPHEQNNQIQARARGVAEGVSAKSNPFLSQQPSYNWTNAMLSWQRTAFHFQPEKNWMNGPLFHMGWYHIFYQYNPDSAVWGNITWGHAVSRDLIHWLYLPIALFPDTWYDINGVWSGSATLLPDGKIIMLYTGDTDQYVQVQNLAYPANLSDPLLLHWVKYPNNPVLVPPRGIGSKDFRDPTTAWFGPDDKWRVTIGSKVNKNKTGVSLVYKTKDFIHYELNNHFLHAVPGTGMWECVDFYPVSVIGSNGLDTSVNGPAVKHVLKASLDDTKEDHYAIGTYFIENDTWVPDNPLEDVGIGLKLDYGRYYASKTFYDQHKQRRVLWGWINESDSEVADLKKGWASLQTIPRTVVFDKKTETNVLQWPVEEVESLRLSSAEFEGIVVKPGSVVPLEIGPATQLDIFAEFEIELLASEGIGNGNDNVGCGEGAVDRSALGPFGILAIADDQLSELTPIYFRLSSARTGSSTTSFCVDETRSSKAPDVSKLVFGSKVPVLSGEKLSMRALVDHSIIESFGQGGRTVITSRVYPTEAIYGAARLFLFNNATDINIKASLKIWQLNSAFIRPFPFGQSQ. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00116 629 MobiDBLite consensus disorder prediction 1 27 - -
Seca6g00116 629 Pfam Glycosyl hydrolases family 32 N-terminal domain 105 422 IPR013148 -
Seca6g00116 629 Pfam Beta-fructofuranosidase, N-terminal domain 12 97 IPR021792 GO:0004564
Seca6g00116 629 CDD GH32_Fruct1-like 111 408 - -
Seca6g00116 629 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 50 618 - -
Seca6g00116 629 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 109 434 - -
Seca6g00116 629 Gene3D - 435 615 - -
Seca6g00116 629 Pfam Glycosyl hydrolases family 32 C terminal 425 614 IPR013189 -
Seca6g00116 629 SMART glyco_32 105 575 IPR001362 GO:0004553|GO:0005975
Seca6g00116 629 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 434 615 - -
Seca6g00116 629 SUPERFAMILY Arabinanase/levansucrase/invertase 98 423 IPR023296 -
Seca6g00116 629 Gene3D Glycosyl hydrolase domain; family 43 109 434 IPR023296 -
Seca6g00116 629 SUPERFAMILY Concanavalin A-like lectins/glucanases 422 619 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00116 Seca-Chr6 3144329 3150521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00116 13 623 Glycoside Hydrolase AT1G12240 59.306 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00116 K01193 - gmx:100814788 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00116 6 3144329 3150521 Seca6g00116 6 3144329 3150521 ECH