Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00063 ATGGCCGAGAACGATTCAAATCCCACTCCTCCACCACAGCCCCAGGAGCACGACGCTGATTTATCCACTGTAACTGTGGAACCGGAGAAGAAACCACTGTCTCCAGAGTCACAGAATGATGCAAAACCTAACCCTAACTCTTCAGAGGATGATGCAAAACCTAACCCTAACCCTTCAGAGGATGTGGTTGTGGTTGAACAACGTGAAGCGGAGGAAGAAGAGCTTCTGCAGCAGCACAAGATTCCTCAGAATTTGGTGTCCTTCAAGGAGGAGAGCAATAGGGTTTGCGATCTCTCAGATTCAGAGAGAAAGGCCGTTGAAGACCTCAAACACCTTCTAACTGAGTCACTCACTTCTTCTTCTTCCGAGGAGGAGGAGGGAGTTTCCATTTGGGGCGTTCCTCTGCTCAAAGACGAAAGGACCGATGTCATTCTTCTCAAATTCCTCAGAGCCAGAGAGTTCAAAGTGAAGGACGCGCTTCTCATGATCAACAACACGCTCCAATGGAGGAAGGACTTCAACATCGACGCGCTTTTGGATGAAGATCTCGGTGATGATTTGGACAAGGTCGTCTTCATGCACGGTCATTCAAGAGAGGGCCACCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAAGGACCTTTATCACAAGGCTTTCTCAGATGAGGAAAGAAGAACCAAGTTCCTACGATGGCGGATTCAGTTCTTGGAAAAGAGTATTAGGAACCTTGACTTCACTCCTGGGGGTATCAACACCATTTTCCAAGTCAATGACCTTAAAAATTCCCCTGGACCTGCTAAAAGGGAACTTCGACTTGCCACCAAACAAGCTTTGCAATTGCTTCAGGACAATTATCCTGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCCTGGTGGTATCTTGCATTCTATACCATGATCAATCCTTTCTTGACTCAGAGGACAAAAAGCAAATTTGTGTTTGCAGGCCCATCCAAGTCTCCTGATACACTTTTCAAGTTAGTCAAGTGA 1020 0.4618 MAENDSNPTPPPQPQEHDADLSTVTVEPEKKPLSPESQNDAKPNPNSSEDDAKPNPNPSEDVVVVEQREAEEEELLQQHKIPQNLVSFKEESNRVCDLSDSERKAVEDLKHLLTESLTSSSSEEEEGVSIWGVPLLKDERTDVILLKFLRAREFKVKDALLMINNTLQWRKDFNIDALLDEDLGDDLDKVVFMHGHSREGHPVCYNVYGEFQNKDLYHKAFSDEERRTKFLRWRIQFLEKSIRNLDFTPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKLVK. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00063 339 CDD SEC14 189 338 IPR001251 -
Seca6g00063 339 MobiDBLite consensus disorder prediction 37 53 - -
Seca6g00063 339 Pfam CRAL/TRIO, N-terminal domain 113 165 IPR011074 -
Seca6g00063 339 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 180 339 IPR001251 -
Seca6g00063 339 PANTHER PATELLIN-1 54 338 IPR044834 GO:0008289
Seca6g00063 339 MobiDBLite consensus disorder prediction 1 71 - -
Seca6g00063 339 PRINTS Cellular retinaldehyde-binding protein signature 307 326 - -
Seca6g00063 339 PRINTS Cellular retinaldehyde-binding protein signature 144 166 - -
Seca6g00063 339 SMART CRAL_TRIO_N_2 141 166 IPR011074 -
Seca6g00063 339 SMART sec14_4 185 339 IPR001251 -
Seca6g00063 339 Gene3D - 91 339 IPR036865 -
Seca6g00063 339 SUPERFAMILY CRAL/TRIO N-terminal domain 92 182 IPR036273 -
Seca6g00063 339 Pfam CRAL/TRIO domain 190 338 IPR001251 -
Seca6g00063 339 SUPERFAMILY CRAL/TRIO domain 190 338 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00063 Seca-Chr6 1552852 1555567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00063 145 338 Acyl Lipid Metabolism Gene Families AT5G47730 26.829 3.86e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00063 - - mnt:21391677 423.705