LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00062	ATGGCTGAGGAAGCCCAAAAACCAGCAGCTGAACAAGTGGTAGCCGCCTCAGAACCTGATGCTGCTGTTACAGAGAAAGAGAAGCCAACTGAAGAAGTAGTGGCTGCTCCTGCCACTGAAGAGCCTGCTGCCCCTGCCGCCGAGAAGGCAGCTGAAGAAGAAGTGGTGGAGACGGCCGCTGAGGAGAAGCCACAAACCGATGCTGCTGTTGAAGACAAGATTTCTCAATCGGTTTCTTTCAAGGAAGAAACCAACGTCGTTTCCGAGCTCCCTGAAGCGCAGAAGAAAGCTCTCGATGAACTCAAACACCTTATTCAAGAAGCTCTTAACAAACACGAACTCTCTGCTCCTCCTCCTCCTCCTCCTCCACCGCCTAAGGTGACGGAGGAAAAGAAAGCTGAAGCAGAAGAAGAAAAGAAGGAAGAGAAGAAAGAGGAAGCAGAAGAGAAGAAGGAAGAAGTGGTAGTAGCGGCGGCGGAAGAAGAGAAACCGCCTTCAACTTCTGAGGAACCTAAAATCGAAGTTGAGGCTGAGGCTCCAAAACCGCCAGAGACAGTTGAAGAGAAGAAGGTGGAGGCTGTGGCGGAGGTGATAGAGAAAGAAGCTTCTTCTACAACTGTGGACGAGGACGGTGCAAAGACCGTGGAAGCTATTAAGGAGAGCATAGTTTCAGTTTCAGTGACTGAGGCTGAATCTGAAGCTGCAACGAAGGAGGAAGAGGAAGTTCCTCCTCCAGAGGAAGTTGAGATATGGGGAATTCCTCTTCTTGCAGATGAGAGGAGCGACGTGATTCTTCTGAAATTCCTGAGAGCTAGGGATTTCAAGGTGAAGGACGCTTTCACTATGATCAAGAACACGGTGCGTTGGAGGAAGGAATTCGGAATCGACGCACTTGTGAATGAGGATCTCGGAAGTGATTGGGACAAAGTGGTGTATACTCATGGATATGACAAAGAAGGACACCAAGTCTGTTACAACGTGTTTGGTGAGTTTGAAGACAAGGAACTGTATCATAACACCTTCTCTGATGAGGAGAAGCGCCTCAAGTTCATCAAGTGGAGGATTCAGTTCTTGGAGAAGAGTGTCAGAAAACTTGACTTCTCTCCCTCTGCTATCTCTACCATTGTTCAGGTCAATGATCTTAAAAATTCTCCTGGACTTGGCAAGAGGGACCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTAGCCAAGCAGATATTTATCAATGTCCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTGCTTTCCTGACACAGAGGACCAAGAGCAAATTTGTATTTGCTGGTCCATCCAAATCTGCTGAAACCCTTTTCAAATATATTGCTCCTGAACTAGTGCCAGTTCAATACGGGGGACTGAGCAGAGAGGGTGAACAGGAATTCACAACTGCTGACCCTGCTACGGAGGTTACAATTAAACCAGCAACAAAACATGCTGTTGAGTTCCCAGTTTCTGAGAAGAGTCACCTGGTTTGGGAAGTCAGAGTTGTGGGTTGGGATGTGAGCTATGGAGCAGAATTTGTGCCAAGCGCTGAAGATGGATACACTGTGATAATACAGAAGAGCAGGAAAATTGCTCCCTCTGATGAGACAGTGATTACTAACAGCTTCAAAGTTGGTGAACCAGGCAAGGTTGTGCTCACCATAGATAACCAAACATCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACCAAACCCATCTCTGAGTAA	1764	0.4756	MAEEAQKPAAEQVVAASEPDAAVTEKEKPTEEVVAAPATEEPAAPAAEKAAEEEVVETAAEEKPQTDAAVEDKISQSVSFKEETNVVSELPEAQKKALDELKHLIQEALNKHELSAPPPPPPPPPKVTEEKKAEAEEEKKEEKKEEAEEKKEEVVVAAAEEEKPPSTSEEPKIEVEAEAPKPPETVEEKKVEAVAEVIEKEASSTTVDEDGAKTVEAIKESIVSVSVTEAESEAATKEEEEVPPPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVNEDLGSDWDKVVYTHGYDKEGHQVCYNVFGEFEDKELYHNTFSDEEKRLKFIKWRIQFLEKSVRKLDFSPSAISTIVQVNDLKNSPGLGKRDLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISAFLTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPATEVTIKPATKHAVEFPVSEKSHLVWEVRVVGWDVSYGAEFVPSAEDGYTVIIQKSRKIAPSDETVITNSFKVGEPGKVVLTIDNQTSKKKKLLYRSKTKPISE.	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00062	587	MobiDBLite	consensus disorder prediction	93	109	-	-
	Seca6g00062	587	Gene3D	-	184	292	-	-
	Seca6g00062	587	Gene3D	-	309	487	IPR036865	-
	Seca6g00062	587	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	314	475	IPR001251	-
	Seca6g00062	587	MobiDBLite	consensus disorder prediction	1	189	-	-
	Seca6g00062	587	SUPERFAMILY	Supernatant protein factor (SPF), C-terminal domain	485	579	IPR036598	-
	Seca6g00062	587	PANTHER	PATELLIN-1	134	584	IPR044834	GO:0008289
	Seca6g00062	587	MobiDBLite	consensus disorder prediction	127	189	-	-
	Seca6g00062	587	Coils	Coil	126	162	-	-
	Seca6g00062	587	Pfam	CRAL/TRIO, N-terminal domain	245	285	IPR011074	-
	Seca6g00062	587	SUPERFAMILY	CRAL/TRIO N-terminal domain	76	301	IPR036273	-
	Seca6g00062	587	CDD	SEC14	306	470	IPR001251	-
	Seca6g00062	587	SUPERFAMILY	CRAL/TRIO domain	310	471	IPR036865	-
	Seca6g00062	587	MobiDBLite	consensus disorder prediction	46	69	-	-
	Seca6g00062	587	SMART	sec14_4	304	472	IPR001251	-
	Seca6g00062	587	ProSiteProfiles	GOLD domain profile.	451	582	IPR009038	-
	Seca6g00062	587	SMART	CRAL_TRIO_N_2	261	286	IPR011074	-
	Seca6g00062	587	Pfam	CRAL/TRIO domain	309	469	IPR001251	-
	Seca6g00062	587	Gene3D	GOLD domain	488	582	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00062	Seca-Chr6	1518739	1521689	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00062	265	449	Acyl Lipid Metabolism Gene Families	AT5G47730	26.904	4.99e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00062	-		K19996	gmx:100794623	610.912