Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00053 ATGAACAAGCTGGTGGTGGAAGTTATTGATGCCAGTGACCTCATGCCCAAAGATGGAGAAGGGTCAGCTAGCCCCTTTGTTGAGATAAACTTTGATGAGCAACAGCAGAGGACTCAAACCAAACACAAAGACCTCAATCCTTATTGGAATGAAAAGTTTGTGTTCAACATTGATGACCCAAGAGATCTTCCTCACAAGACAATTGAAGTGGTTGTATATAGTTACAATGATCGAAAAGCTGGTAACCACAAGAACTTCCTTGGAAGGGTGAGAATTTCAGGTGTTTCTGTTCCTTTGTCTGAGTCTGAGGCTACTGTCAATCGCTACCCACTTGACAAACGTGGTCTCTTTTCAAATATCAAAGGGGATATTGCTCTTAGAATTTATGCTTTTCATGATCCTTCTGCTTATACTCCTCCTCCTCCACAACCACAGCCACAACCACAAGCCAGTCCTGCTGTTGAATTTGAGCCTGATATGGAGACTCCCTTGCAAGAAATAAACACTAACATAGTAGATGAGGAAAGCATGGTTGGTGATGGTGAGAAGAAGAAGAAGAAAAAGAAAGAAAAGGAAGTGAGAACTTTTCACTCCATTGGGACAGAGAAAGCTGCTCCTGCTCCTGCATTCAGGCCTCCTCCAGTAGTGGAAACAAGGGCTGATTTTGCAAAAGCTGGACCACCCAATGTGATGTTAATGCAGATCCCAAAGCAAAACCCAGAGTATTCATTGGTGGAGACAAGTCCACCATTAGCAGCTCGTTTGCGCTATAGAGGAGGGGACAAGATATCAACCACCTATGATTTAGTGGAACAGATGCATTTCTTGTATGTGAATGTGGTGAAAGCTAGAGATCTTCCTGTTATGGATATCTCAGGAAGCCTTGACCCTTATGTGGAAGTGAAGCTTGGTAACTACAAAGGAGTCACAAAGCACTTGGAGAAGAATCAGCATCCAGTTTGGAAGCAAATCTTTGCCTTCTCAAAGGAGAGGTTGCAATCAAATTTGCTTGAAGTGACAGTGAAGGATAAGGACATTGGTAAAGATGATTTTGTGGGTAGAATTCTGTTTGATCTCACTGAGGTTCCTCTTCGGGTACCCCCAGATAGTCCCTTGGCTCCTCAATGGTACCGATTGGAGGATAAGAAAGGGATGAAAATAAATAATGGGGAAATCATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGTCATTTCCTGAGGCATGGCACTCTGATGCTCATAACATTAGTCACTCAAACCTTGCAAATACACGATCAAAGGTATACTTCTCACCCAAGCTTTACTACCTTAGAGTTCAAGTGATTGAAGCTCAAGATCTTGTCCCTTCCGATAAAGGAAGACTCCCAGATACTTCTGTTAGAGTACAACTTGGAAATCAGATTAGATACACAAGGCCTGCTCCAAAAGCCACTAACCCCATTTGGAATGATGAGCTTATGTTTGTGGCAGCTGAGCCTTTTGAGGATTTTATAATTGTGACTGTTGAGGAGAAAGTAGGTCCTAATGTTGAGATCTTAGGAAGGGAGATCATATCAGTCAGAAGTGTTCCACCCAGACATGAAACCAGCAAGCTCCCTGATTCTCGTTGGTACAATTTGCACAGGCCTAGTGCAGTTGGTGAGGAAGAAACAGAGAAAAAGAAGGAGAAATTCTCAAGCAAGATTCACCTACGAATCTGTCTAGAGGCAGGGTATCATGTGCTTGATGAGTCCACCCATTTTAGCAGTGATCTTCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTTGAACTTGGGATACTGAGTGCCAGGAATTTGCTACCTATGAAGGCCAAGGAAGGCAGGACAACTGATGCATACTGTGTGGCTAAGTATGGCAACAAATGGGTTCGAACCAGAACCCTTCTTGACACACTCACACCTCGATGGAATGAGCAGTATACATGGGAAGTTTATGATCCATGTACTGTGATCACAATTGGGGTTTTTGACAATTACCACATCAATGGGAGCAGTGACAATAGAGATCAGAGAATTGGGAAGGTAAGAATCAGGTTATCAACACTTGAAACTGATAGAGTTTATACTCACTTTTATCCTCTGCTGGTTCTCCAATCAAATGGCCTGAAGAAGAATGGAGAGCTTCACTTGGCTGTGAGATTCACCTGCACAGCTTGGGTTAATATGGTAGCTCAGTATGGAAGGCCTTTGCTTCCCAAAATGCATTATGTCCAACCAATACCTGTTAGGCACATAGATTGGCTACGTCACCAGGCCATGCAGATTGTGGCAGCAAGACTGTCAAGAGCTGAGCCACCACTTAGACGTGAAGCAGTTGAGTATATGCTTGATGTGGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTCACCGCATAATGTCACTCCTCTCAGGTGTTACAGCTGTGTGTAAATGGTTTGATGACATTTGCACTTGGAGAAACCCAGTGACAACCTGCCTAGTTCACATCTTGTTCTTGATACTGGTTTGCTACCCAGAACTGATATTGCCCACCATTTTCCTTTACTTGTTTGTAATTGGGATTTGGAATTACCGGTTCAGGCCGAGGCATCCACCCCACATGGATGCTAGGCTTTCACAAGCAGAAACTGTCCACCCAGATGAATTGGACGAGGAATTTGACTCTTTTCCAACTTCAAAACCTGCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCAGGTAGAGTACAGACAGTGGTTGGAGATTTGGCTACTCAAGGAGAAAGAGCTCAAGCGATACTAAGTTGGAGAGACTCGAGGGCTACAGCTATCTTCATCATCTTCTCACTCATCTGGGCTGTGTTCATTTACATTACTCCATTCCAAGTAGTAGCAATTCTAGTAGGTTTCTACATGCTGCGTCATCCTCGGTTTAGGAGCAAGATGCCATCAGTACCTGTTAATTTCTTCAAGAGATTGCCTTCCAAATCTGATATGCTGCTATAA 3021 0.434 MNKLVVEVIDASDLMPKDGEGSASPFVEINFDEQQQRTQTKHKDLNPYWNEKFVFNIDDPRDLPHKTIEVVVYSYNDRKAGNHKNFLGRVRISGVSVPLSESEATVNRYPLDKRGLFSNIKGDIALRIYAFHDPSAYTPPPPQPQPQPQASPAVEFEPDMETPLQEINTNIVDEESMVGDGEKKKKKKKEKEVRTFHSIGTEKAAPAPAFRPPPVVETRADFAKAGPPNVMLMQIPKQNPEYSLVETSPPLAARLRYRGGDKISTTYDLVEQMHFLYVNVVKARDLPVMDISGSLDPYVEVKLGNYKGVTKHLEKNQHPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRILFDLTEVPLRVPPDSPLAPQWYRLEDKKGMKINNGEIMLAVWMGTQADESFPEAWHSDAHNISHSNLANTRSKVYFSPKLYYLRVQVIEAQDLVPSDKGRLPDTSVRVQLGNQIRYTRPAPKATNPIWNDELMFVAAEPFEDFIIVTVEEKVGPNVEILGREIISVRSVPPRHETSKLPDSRWYNLHRPSAVGEEETEKKKEKFSSKIHLRICLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKAKEGRTTDAYCVAKYGNKWVRTRTLLDTLTPRWNEQYTWEVYDPCTVITIGVFDNYHINGSSDNRDQRIGKVRIRLSTLETDRVYTHFYPLLVLQSNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFHRIMSLLSGVTAVCKWFDDICTWRNPVTTCLVHILFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAETVHPDELDEEFDSFPTSKPADIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILSWRDSRATAIFIIFSLIWAVFIYITPFQVVAILVGFYMLRHPRFRSKMPSVPVNFFKRLPSKSDMLL. 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00053 1006 Pfam Plant phosphoribosyltransferase C-terminal 851 1006 IPR013583 -
Seca6g00053 1006 SMART C2_3c 3 111 IPR000008 -
Seca6g00053 1006 SMART C2_3c 275 371 IPR000008 -
Seca6g00053 1006 SMART C2_3c 437 533 IPR000008 -
Seca6g00053 1006 SMART C2_3c 600 703 IPR000008 -
Seca6g00053 1006 CDD C2C_MCTP_PRT_plant 437 588 IPR047258 -
Seca6g00053 1006 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
Seca6g00053 1006 Gene3D C2 domain 1 132 IPR035892 -
Seca6g00053 1006 MobiDBLite consensus disorder prediction 133 154 - -
Seca6g00053 1006 ProSiteProfiles C2 domain profile. 257 377 IPR000008 -
Seca6g00053 1006 ProSiteProfiles C2 domain profile. 582 704 IPR000008 -
Seca6g00053 1006 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 3 1006 IPR047259 -
Seca6g00053 1006 MobiDBLite consensus disorder prediction 135 151 - -
Seca6g00053 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 599 732 IPR035892 -
Seca6g00053 1006 Gene3D C2 domain 419 569 IPR035892 -
Seca6g00053 1006 Gene3D C2 domain 262 398 IPR035892 -
Seca6g00053 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 275 414 IPR035892 -
Seca6g00053 1006 Gene3D C2 domain 574 728 IPR035892 -
Seca6g00053 1006 FunFam C2 domain-containing protein 582 730 - -
Seca6g00053 1006 Pfam C2 domain 276 377 IPR000008 -
Seca6g00053 1006 Pfam C2 domain 3 103 IPR000008 -
Seca6g00053 1006 Pfam C2 domain 437 541 IPR000008 -
Seca6g00053 1006 Pfam C2 domain 599 706 IPR000008 -
Seca6g00053 1006 FunFam C2 domain-containing protein 270 415 - -
Seca6g00053 1006 CDD C2A_MCTP_PRT_plant 3 129 - -
Seca6g00053 1006 CDD C2B_MCTP_PRT_plant 275 400 IPR047257 -
Seca6g00053 1006 ProSiteProfiles C2 domain profile. 416 539 IPR000008 -
Seca6g00053 1006 CDD C2D_MCTP_PRT_plant 600 723 IPR047255 -
Seca6g00053 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 436 590 IPR035892 -
Seca6g00053 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 148 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00053 Seca-Chr6 1406656 1409676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00053 1 1006 Lipid Metabolism Gene Families AT1G22610 73.521 0.0 1521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00053 - - gmx:100778133 1741.47