Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00052 ATGGAGGACATTGAGGATTTGCTGATTGGAAGCGGAACTGGAACTCCACCTGGATTTCGTTTGCCATTAGCGTCTGTTGCTGTTGGCGTTGGAACGAAGAGGAATCTACGCTCTTCACCTTCTCCTTCGCCCTCAATCCCTGGCACTCAGATTATTTACATGAAGACCTTCGGGTGCTCTCATAATCAGAGTGACAGTGAATATATGGCTGGTCAGCTTTCAGCTTTTGGTTATTCATTAAGCGATAATCCTGATGAAGCAGATCTTTGGCTCATAAACACTTGCACAGTGAAATCCCCGAGTCAGTCAGCCATGGATACCATTATAACAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGGGACTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATCGATCGCGTTGTTGAAGTTGTAGAGGAGACTTTAAAAGGTCATGAAGTGCGGCTTTTGACCCGTAAGAAGTTGCCAACACTTGACCTTCCGAAGGTGAGAAAGAACAAGTTTGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCGCGGGGTCACCTTGGGAGTTACACAATAGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGAAGGTGTTAAAGAGATATGGCTGAGCAGTGAAGACACTGGAGCATATGGTCGTGACATTGGTGTCAACCTTCCAACTTTATTGAAGGCCTTAGTAGAAGAACTACCAGCTGATGCAAGTACTATGCTGCGTGTTGGAATGACCAATCCTCCTTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGATTTTGCGGCATCCATGTGTGTACTCTTTTTTGCACGTACCAGTTCAATCTGGAAGTGATGCTATTTTGAGTGCAATGAATCGGGAATATACTGTGGGTGAGTTCAGGACTGTTGTAGATACCTTAACTGATCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGCGCAGACTGTCAACCTTATTAAAGAGCACAAGTTCCCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGTGCTACTGTATGCTACTCGCTCGTTATAAAGGGCCACACAATGTCTCCATCCTTTTCAATAACTGCCGAGGGAACTATTTTTTTTCTTGATGAAGAAATCTGTAATAAACATCTTTTCTAA 1260 0.4294 MEDIEDLLIGSGTGTPPGFRLPLASVAVGVGTKRNLRSSPSPSPSIPGTQIIYMKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDEADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVEELPADASTMLRVGMTNPPFILEHLKEIAEILRHPCVYSFLHVPVQSGSDAILSAMNREYTVGEFRTVVDTLTDLVPEMQIATDIICGFPGETDEDFAQTVNLIKEHKFPQVHISQFYPRPGATVCYSLVIKGHTMSPSFSITAEGTIFFLDEEICNKHLF. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00052 419 SUPERFAMILY Radical SAM enzymes 172 391 - -
Seca6g00052 419 Gene3D tm_1862 like domain 181 390 IPR023404 -
Seca6g00052 419 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 52 382 IPR005839 GO:0006400|GO:0016740|GO:0051539
Seca6g00052 419 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 52 381 IPR006466 GO:0035598|GO:0035600
Seca6g00052 419 ProSiteProfiles Radical SAM core domain profile. 179 419 IPR007197 GO:0003824|GO:0051536
Seca6g00052 419 PANTHER RADICAL SAM PROTEINS 1 380 - -
Seca6g00052 419 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 50 158 IPR013848 GO:0035596|GO:0051539
Seca6g00052 419 Pfam Uncharacterized protein family UPF0004 52 130 IPR013848 GO:0035596|GO:0051539
Seca6g00052 419 Pfam Radical SAM superfamily 190 362 IPR007197 GO:0003824|GO:0051536
Seca6g00052 419 SMART MiaB 183 396 IPR006638 GO:0003824|GO:0051536
Seca6g00052 419 ProSitePatterns Methylthiotransferase radical SAM domain signature. 187 207 IPR020612 GO:0051539
Seca6g00052 419 SFLD Radical SAM 128 383 IPR007197 GO:0003824|GO:0051536
Seca6g00052 419 Gene3D - 52 171 IPR038135 -
Seca6g00052 419 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 51 170 - -
Seca6g00052 419 SFLD B12-binding domain containing 128 383 - -
Seca6g00052 419 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 183 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00052 Seca-Chr6 1399967 1404886 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00052 K15865 - gmx:100798865 693.73