Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00036 ATGAGGGAGAGTAACGGGAAGAGCAATGGAGATGGAGTAGATCTGGGAGTGTACTTTCTGGAGGTGTGTCGTCGTCGTGGTCGTGGGAAGGAGATTATCGAAGAAGATGAAGAAGAGGAAGAGGCACCGTGCGAACTCAACACCATTAACAGTTCTGGAGGTTTTGTGGTGGTTTCCACCGACAAACTTTCAGTTAAGTACACAAGCGTCAACCTTCACGGCCACGATGTTGGTGTCATTCAGGCTAACAAGCCTGCTCCAACCAAACGCCTCGTTTACTATTTCGAGATTCATGTCAAGGATGCTGGTGTTAAGGGTCAGATTGCCATTGGCTTCACTTCAGAGACCTTCAAGATGCGAAGACAACCAGGGTGGGAGGCTAATAGCTGTGGATATCATGGGGATGATGGTTTGCTTTATCGTGGACATGGCAAAGGAGAAGCCTTTGGCCCAACTTATACATCTGGTGATATAGTTGGTGCTGGAATTAACTATGCCGCACAGGAATTTTTTTTCACTAAAAATGGGCAAGTTGTTGGCACAGTTTACAAAGACATGAAAGGTCCCCTTTTTCCAACCATTGCCGTTCATAGCCAAAATGAAGAGGTGCATGTCAACTTTGGGCAGAAACCATTTACTTTTGACCTAAAGGAATTTGAAGCACAGGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTCCTGTACCACCAAATGTCAGTTACGGAATTGTCCGTTCCTACCTTCTACACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAGAAGTACTGTTCCTCCTATATATATAGCTCAAGAGAATGGAAATGATGAGCAGGGAATAACATATGCGTTAAATCACAGAAAGACATTACGGCAGCTAATCAGGGATGGGGAGATTGATATTGCACTTGGTAAATTGCGTGAATGGTATCCCCAGATTGTTGAGGACAATACATCAGCTACATGTTTTCTGCTTCATTGTCAAAAATTTATCGAATTAGTTCGGGTATATTCCTTTCAATATTTCGTTTTGTAA 1050 0.4267 MRESNGKSNGDGVDLGVYFLEVCRRRGRGKEIIEEDEEEEEAPCELNTINSSGGFVVVSTDKLSVKYTSVNLHGHDVGVIQANKPAPTKRLVYYFEIHVKDAGVKGQIAIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEAFGPTYTSGDIVGAGINYAAQEFFFTKNGQVVGTVYKDMKGPLFPTIAVHSQNEEVHVNFGQKPFTFDLKEFEAQERMKQQLKIEEIPVPPNVSYGIVRSYLLHYGYEDTLNSFDVASRSTVPPIYIAQENGNDEQGITYALNHRKTLRQLIRDGEIDIALGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVYSFQYFVL. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00036 349 SMART ctlh 288 346 IPR006595 -
Seca6g00036 349 Pfam SPRY domain 93 209 IPR003877 GO:0005515
Seca6g00036 349 PANTHER RAN BINDING PROTEIN 9-RELATED 41 341 - -
Seca6g00036 349 ProSiteProfiles B30.2/SPRY domain profile. 24 212 IPR001870 -
Seca6g00036 349 Pfam CTLH/CRA C-terminal to LisH motif domain 290 340 IPR024964 -
Seca6g00036 349 Gene3D - 27 228 IPR043136 -
Seca6g00036 349 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 288 346 IPR006595 -
Seca6g00036 349 SMART SPRY_3 90 211 IPR003877 GO:0005515
Seca6g00036 349 CDD SPRY_RanBP_like 78 208 IPR044736 -
Seca6g00036 349 FunFam Ran-binding protein M homolog 28 222 - -
Seca6g00036 349 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 214 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00036 Seca-Chr6 980669 996356 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00036 K23334 - gmx:100805319 608.216