Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12199 ATGACGGGGGATGAAGGACCAAGCTACACAGTAGATGATGCTCTTGTGGCTTTGGGTTTTGGAAATTTCCAAATCCTTGTGCTTGCCTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGCTACTCTCTTTTGTGGGCCCTGCAGTACAATCTGCATGGAATCTTTCTCCTCATGAAGAGAGCTTGATAACCAGTGTAGTTTTTGCTGGCATGTTAATTGGGGCGTACTCATGGGGCATTGTTTCGGATAAGCATGGAAGGAGGAAAGGATTCCTTATCACAGCAACAGTCACTGCTATGGCTGGTTTTCTGAGTGCATTTGCTCCTAACTATACATTATTAATTGTCCTTCGTTCTCTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTGTTATCATCTTGGTTTCTTGAGTTTGTTCCAGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGCATTTTGGACTCTTGGTACAATTTTTGAGGCATCACTTGCATGGATTGTGATGCCAAAACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTTTTTTCTACAAAGTAACACCTGAGTCACCAAGATACCTATGTTTGAAAGGTAGAACAACTGATGCGATTAATGTTTTGGAGAAAATAGCAAGAGTAAATGGAAGAGAACTTCCTTCCGGTATCCTTGTTTCTGACCATCAAATTGAGCTACATAAAATTGATAACCCTTCGGAGGACACGCATTTACTCTCACCAAGAAAAAATGAAGTTGAACCTCCTAAAGTAATTGTTTCCAATTTAGGTGGTATCTCATCACTGCTAGTGCTTCTCTCACCAAATTTGGCAAGGTCAACCCTTCTATTATGGGCTGTGTTCTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACCACTGAGTTAAACGGACATAGTAAATGCATGCCACATAAATTGCAGACAGAGAAGTCCCAGGATGTTAGATACAAAGATGTTTTTATTGCTAGTTTTGCAGAGTTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTCGGTCGTAAACTCTCAATGTCAACCATGTTCTTCATGTGTTGTATTTTTCTTCTCCCGTTAATATTCTATCTGCCTGAAGGCCTAACCACGAGCCTTTTATTTGGAGCCCGCATATGCATCACAGCAACCTTTACAATCGTGTATATATATGCACCAGAGATATACCCAACATCAGTCAGAACAACTGGTGTCGGAATTGCAAGCTCAGTGGGCAGAATTGGTGGAATGATATGTCCTTTGGTAGCAGTGAGCTTAGTACATGATTGTCATCAAACTGCAGCTGTCCTTCTGTTTGAAATCGTAGCGCTTCTTTCAGGAATATGTGTTCTGTTCTTTCCGGTTGAGACCATGGGGCAAGAACTGCAAGATAGCGTGTCAAGTCTAAAACAGACCAACAACGCATAA 1485 0.4215 MTGDEGPSYTVDDALVALGFGNFQILVLAYAGIGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTAMAGFLSAFAPNYTLLIVLRSLVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLPTSFLLFFYKVTPESPRYLCLKGRTTDAINVLEKIARVNGRELPSGILVSDHQIELHKIDNPSEDTHLLSPRKNEVEPPKVIVSNLGGISSLLVLLSPNLARSTLLLWAVFFGNAFSYYGLVLLTTELNGHSKCMPHKLQTEKSQDVRYKDVFIASFAELPGLLLSAAAVDKLGRKLSMSTMFFMCCIFLLPLIFYLPEGLTTSLLFGARICITATFTIVYIYAPEIYPTSVRTTGVGIASSVGRIGGMICPLVAVSLVHDCHQTAAVLLFEIVALLSGICVLFFPVETMGQELQDSVSSLKQTNNA. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12199 494 PANTHER SYNAPTIC VESICLE GLYCOPROTEIN 2 8 479 - -
Seca4g12199 494 Gene3D MFS general substrate transporter like domains 21 485 IPR036259 -
Seca4g12199 494 ProSitePatterns Sugar transport proteins signature 1. 353 368 IPR005829 GO:0016020|GO:0022857|GO:0055085
Seca4g12199 494 SUPERFAMILY MFS general substrate transporter 13 482 IPR036259 -
Seca4g12199 494 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 477 IPR020846 GO:0022857
Seca4g12199 494 FunFam Organic cation/carnitine transporter 7 22 478 - -
Seca4g12199 494 Pfam Sugar (and other) transporter 351 482 IPR005828 GO:0016020|GO:0022857|GO:0055085
Seca4g12199 494 Pfam Sugar (and other) transporter 62 225 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12199 Seca-Chr4 262777377 262788954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12199 49 493 Organic Solute Cotransporters AT3G20660 26.201 8.84e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12199 - - gmx:100786568 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12199 4 262777377 262788954 Seca4g12199 4 262777377 262788954 ECH