Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12197 CTGACTGCAGGTTTTGACAATGGCAACAGCGAATGGGATGAATATCCTTCATATCTCAATTCTGCTGGACTAGAAATTGGATCTCCTGGTGTCTACAATGAAAATCAATCTCTTATTTTCCATTCTGGATATGGCTTCAACCCACAAATGCCTTATGGACCGTACTCTCCAGTTTCCACACCTTTGCCTTCTGTAGGTGGAGATGCACAGTTATACTCCTCTCAACAATTTCCATACACTGGGCCGCCTTATTACCATCAACTGGTTCCTCCTAGCGTACCATATCTTAATTCACCGACTCCAGTTTCACAGCCAGAGGTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAGCATGTTTTTTGGAACAAGGTTGAGCTATCCTTCAGTGGGATCTTTTGGCAGAGGAAGCTATCCTGTACCACCTGCTTCATTCAGCTTTCACGAATCCCAACAAGGATTTGATGGATCAAGATCTGGTGGAATCTGGTCCGATTGCTCAAAACCCTTAGAAAGGCAGAGGTCTTTGATGTCACCATCCGTTTCTCCACAGCCAATTGGCTCACTTGGGTCATTTGGGCTGAGTGTTGGAATGCCTTTGATAAGGTCTGGAGAAGGTACTGATGAAATCTCAGCAGAATGGCTGCCTCATGCACTGAAAAGGTGCCGATGCATGGAAATAATGATAAGCACACACCGAGATGACTGGAGCATTTGGCAGCGCAGCTCCTGGGCTTCTCATCAACAGCAATCGTTGTATGGGTTTGGATCTGGTTCAAACTCCTATGGTAGAGGCTACCTTCCTAACCAGGGTTCTAGCTTTGGAGACACTGCCATTTCCAGTCTTAGTACTAATGACAGGAGCTTTATTTCTCTTGAAAATAGCAGACGGCAAGGGAGGGCAGCTGCTTCTCTCTGTAAATGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCGAGGGCCTCAAAGCTGAAATGTCAAATTTCAGCTGAAAATAATTCTGTTGATAGTAGTAAAAATAGTGCATCTACCTCCAAGTTCCAAGATGAATCACTCAACCGGCCAGATTTTGCCACAGATTATAAGGATGCCAAATTTTTTGTCATCAAATCTTATAGTGAAGATAATGTGCACAAGAGCATTAAATATGGTGTCTGGGCTAGTACACCAAATGGAAACAGAAAGTTAGATGCTGCATATTCCCAAGCAAAGGAGAAGCAAGATGCCTGTCCTATATTTCTCTTTTTCTCGGTAGTCATCTGA 1275 0.4392 LTAGFDNGNSEWDEYPSYLNSAGLEIGSPGVYNENQSLIFHSGYGFNPQMPYGPYSPVSTPLPSVGGDAQLYSSQQFPYTGPPYYHQLVPPSVPYLNSPTPVSQPEVTNLVGIDQQVDSMFFGTRLSYPSVGSFGRGSYPVPPASFSFHESQQGFDGSRSGGIWSDCSKPLERQRSLMSPSVSPQPIGSLGSFGLSVGMPLIRSGEGTDEISAEWLPHALKRCRCMEIMISTHRDDWSIWQRSSWASHQQQSLYGFGSGSNSYGRGYLPNQGSSFGDTAISSLSTNDRSFISLENSRRQGRAAASLCKCNGTLDILSEQNRGPRASKLKCQISAENNSVDSSKNSASTSKFQDESLNRPDFATDYKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYSQAKEKQDACPIFLFFSVVI. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12197 424 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 11 422 IPR045168 -
Seca4g12197 424 CDD YTH 369 422 IPR007275 GO:0003723
Seca4g12197 424 Gene3D ph1033 like domains 345 423 - -
Seca4g12197 424 Pfam YT521-B-like domain 368 422 IPR007275 GO:0003723
Seca4g12197 424 ProSiteProfiles YTH domain profile. 368 424 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12197 Seca-Chr4 262750081 262752701 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12197 K20102 - gmx:100779278 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12197 4 262750081 262752701 Seca4g12197 4 262750081 262752701 ECH