Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12193 ATGTGGAGGCTGAAGATAGCAGATGGTGGGAAGGACCCGTACATATTCAGCACGAACAACTTCGTGGGGAGACAGATATGGGAGTTTGATCCTGAGGCAGGTACTCCAGAGGAGCGAGCACAGGTTGAAGCAGCTCGTCAGGATTTCTATAACAACCGCTACAAGATAAAGCCCTGTGGCGACCTCCTTTGGCGTTTTCAGGTTCTAAGGGAAAACAACTTCAAACAAACAATACCGAGTGTGAAGATAGAAGATGGAGAGGAGATTACATACGAAAAAGCCACATCTGCGTTGAAAAGGGGAGCGCTTCACCTATCAGCATTACAGACCAGTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTGTTTTTCCTTCCTCCCCTGGTCTTTTGCATGTACATTACAGGACATTTGGACTCGGTATTCCCAGAAGAGTATCGCAAAGAGATTCTCCGTTATATATACTATCACCAGAATGAAGATGGAGGGTGGGGACTGCACATAGAGGGTCACAGTACCATGTTTTGTACTGCACTCAACTACATATGTATGCGAATTCTTGGAGAAGGGCCTGATGGAGGTCAAGACAATGCTTGTGCCAGAGCAAGAAAGTGGATTCATGATCATGGTGGTGTAACACATATACCTTCATGGGGAAAGACTTGGCTATCGATACTTGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCTGAATTTTGGATCCTTCCTTCATTTCTTCCTATGCATCCAGCTAAAATGTGGTGTTATTGTCGATTGGTATACATGCCTATGTCTTACTTGTACGGGAAGAGGTTTGTGGGTCCAATCACGCCACTCATCTTACAGTTGAGAGAAGAACTCTTCACTCAACCTTATGAAAAAGTTAACTGGAAGAAAGCACGTCACCAATGTGCTAAGGAAGATCTTTACTATCCACATCCTTTGATACAAGATCTGATATGGGATAGTTTATACATATTCACTGAGCCACTTCTGACTCGTTGGCCTTTTAACAAGCTGGTTAGAGAAAAGGCCCTTCAAGTAACAATGAAACATATCCACTATGAAGATGAGACCAGTCGATACATAACCATTGGGTGCGTAGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCAGAAGATGGAATGACCATGCAGAGTTTTGGTAGCCAAGAATGGGATGCTGGTTTTGCCGTTCAAGCTTTGCTTGCCTCTAACCTAATTGAGGAACTTGGTCCCACACTTGCAAAAGGACATGATTTCATCAAGAAATCTCAGGTTAGGGACAACCCTTTAGGAGATTTTAAGAGTATGTATCGTCATATTTCTAAAGGGTCATGGACCTTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGTGTTGTCTACTCCTATCAATGTTGCCTCCAGAGATTGTAGGTGAAAAGATGGAACCTGAAAGGCTATATGATTCTGTGAATCTCCTATTATCACTCCAGAGTAAAAAGGGTGGTTTAGCAGCATGGGAGCCGGCAGGAGCTCAAGAATGGTTGGAACTACTTAATCCCACGGAATTTTTCGCGGATATTGTAGTTGAGCATGAATATGTTGAGTGCACTGGATCAGCAATTCAGGCTTTAGTTTTGTTCAAGAAGCTGTATCCAGGGCATAGAAAGAAAGAGATAGAGAATTTCATTGCCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCCTGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGTTCTTGGTTCGCACTGGGTGGTCTAGCAGCCGCTGGCAAAACTTACACCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTCACAACACAGAGAGAGGATGGTGGGTGGGGAGAGAGCTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTTGAAGGAAACCGATCAAATGTTGTACATACAGCTTGGGCTCTTATGGGTTTAATTCACGCTGGCCAGGCGGAGAGAGACCCCACTCCTCTTCACCGTGCTGCAAAATTGATCATCAATTCTCAGCTGGAGGAGGGTGATTGGCCCCAACAGGTTCATCCCAATCCTTTGATATTGATAATATAG 2199 0.4416 MWRLKIADGGKDPYIFSTNNFVGRQIWEFDPEAGTPEERAQVEAARQDFYNNRYKIKPCGDLLWRFQVLRENNFKQTIPSVKIEDGEEITYEKATSALKRGALHLSALQTSDGHWPAQIAGPLFFLPPLVFCMYITGHLDSVFPEEYRKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPDGGQDNACARARKWIHDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMTMQSFGSQEWDAGFAVQALLASNLIEELGPTLAKGHDFIKKSQVRDNPLGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNLLLSLQSKKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGNRSNVVHTAWALMGLIHAGQAERDPTPLHRAAKLIINSQLEEGDWPQQVHPNPLILII. 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12193 732 NCBIfam squalene/oxidosqualene cyclases 98 723 IPR018333 GO:0005811|GO:0016104|GO:0016866
Seca4g12193 732 ProSitePatterns Terpene synthases signature. 605 619 IPR002365 GO:0016866
Seca4g12193 732 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 351 724 IPR008930 -
Seca4g12193 732 Gene3D - 492 724 - -
Seca4g12193 732 SFLD Prenyltransferase Like 2 91 722 IPR018333 GO:0005811|GO:0016104|GO:0016866
Seca4g12193 732 Gene3D - 119 414 - -
Seca4g12193 732 Pfam Squalene-hopene cyclase N-terminal domain 100 403 IPR032697 -
Seca4g12193 732 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 723 IPR018333 GO:0005811|GO:0016104|GO:0016866
Seca4g12193 732 Pfam Squalene-hopene cyclase C-terminal domain 418 724 IPR032696 -
Seca4g12193 732 CDD SQCY_1 98 722 IPR018333 GO:0005811|GO:0016104|GO:0016866
Seca4g12193 732 FunFam Uncharacterized protein 119 349 - -
Seca4g12193 732 FunFam Terpene cyclase/mutase family member 389 725 - -
Seca4g12193 732 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 410 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12193 Seca-Chr4 262700684 262711406 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12193 K15813 K20658 ag:BAA89815 1478.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12193 4 262700684 262711406 Seca4g12193 4 262700684 262711406 ECH