Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12170 ATGAAGCTCACAGTGAAGACTTTGAAAGGAAGCCATTTCGAAATCAGGGTTCAGCCCTCGGACACTTCTTTTTCACCTCAGGTTATGGCTGTCAAGAAGAACATTGAAGACGTACAAGGCAAAGATAATTACCCCTGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACGTTAGTAGAGAACAAGGTCTCAGAAGATGGCTTTCTTGTAGTCATGCTTAGCAAGAGTAAAACATTGGGTTCTTCTGGTTCTGGGGCTTCATCTGTTCAGCCTGTTAGCAATCCTCCTAGGATTGTTTCAAGTTCAACGTCAAATTCCACTCCTGCTCCTGAACCTCCAGTACAAACTCAAGCTGCCAACAACAGTAACTCTGGCACAGATGCTACAACTGCAAATGTGTCTATAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGATATGGGCGCTGGCAACTGGGACAGAGATACAGTTAGTCATGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTACTCTGGAATTCCTGAGGCAGCAGAAGTTGCTGTACCAGTTCCTCAATACCCAGATAGCCTGACTACTGAAACAGCTGGGATCTCTGCTGGAGCGGTTCCTGGAGCACCTAACTCATCTCCTTTAAATATGTTTCCTCAGGAGACGATTTCTGGTACTGGTGCTGGACTTGGATCACTTGACTTTCTTAGAAGCAATCCCCAGTTTCAAGCGTTGCGTTCAATGGTTCAAACTAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTCGGTAAGCAGAATCCCAATCTTTTAAGACTGATTCAAGAGCATCGTGCAGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAAGTGATGATATATTTGACCAACCTGAGCAAGACATGCCTCATGCCATCAATGTCACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCATGTGATCGTGATGAGCAATTGGCAGCCAACTACTTATTGGAGAACGCTGGAGATTTTGAAGATTAA 1146 0.4407 MKLTVKTLKGSHFEIRVQPSDTSFSPQVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTLGSSGSGASSVQPVSNPPRIVSSSTSNSTPAPEPPVQTQAANNSNSGTDATTANVSIDTYGQAASNLVAGSNLEQTIQQIMDMGAGNWDRDTVSHALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQYPDSLTTETAGISAGAVPGAPNSSPLNMFPQETISGTGAGLGSLDFLRSNPQFQALRSMVQTNPQILQPVLQELGKQNPNLLRLIQEHRAEFLQLINEPVEGSESDDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12170 381 Coils Coil 282 302 - -
Seca4g12170 381 FunFam UV excision repair protein RAD23 B 245 311 - -
Seca4g12170 381 FunFam UV excision repair protein RAD23 homolog 328 376 - -
Seca4g12170 381 PRINTS DNA repair protein Rad23 signature 331 347 IPR004806 GO:0006289
Seca4g12170 381 PRINTS DNA repair protein Rad23 signature 281 303 IPR004806 GO:0006289
Seca4g12170 381 PRINTS DNA repair protein Rad23 signature 363 378 IPR004806 GO:0006289
Seca4g12170 381 PRINTS DNA repair protein Rad23 signature 348 362 IPR004806 GO:0006289
Seca4g12170 381 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 198 IPR015940 -
Seca4g12170 381 Pfam Ubiquitin family 3 81 IPR000626 GO:0005515
Seca4g12170 381 Pfam XPC-binding domain 255 310 IPR015360 GO:0003684|GO:0006289|GO:0043161
Seca4g12170 381 SUPERFAMILY UBA-like 154 205 IPR009060 GO:0005515
Seca4g12170 381 MobiDBLite consensus disorder prediction 84 136 - -
Seca4g12170 381 ProSiteProfiles Ubiquitin domain profile. 1 84 IPR000626 GO:0005515
Seca4g12170 381 FunFam UV excision repair protein RAD23 1 85 - -
Seca4g12170 381 SMART uba_6 157 197 IPR015940 -
Seca4g12170 381 SMART uba_6 337 374 IPR015940 -
Seca4g12170 381 SUPERFAMILY XPC-binding domain 252 317 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca4g12170 381 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 370 - -
Seca4g12170 381 Gene3D - 1 85 - -
Seca4g12170 381 NCBIfam UV excision repair protein Rad23 1 380 IPR004806 GO:0006289
Seca4g12170 381 CDD Ubl_Rad23 1 79 - -
Seca4g12170 381 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 335 375 IPR015940 -
Seca4g12170 381 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Seca4g12170 381 SMART ubq_7 1 80 IPR000626 GO:0005515
Seca4g12170 381 Gene3D - 150 200 - -
Seca4g12170 381 Gene3D - 328 376 - -
Seca4g12170 381 Pfam UBA/TS-N domain 337 372 IPR015940 -
Seca4g12170 381 Pfam UBA/TS-N domain 157 195 IPR015940 -
Seca4g12170 381 Gene3D - 246 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca4g12170 381 SUPERFAMILY UBA-like 316 378 IPR009060 GO:0005515
Seca4g12170 381 SMART CBM 253 296 IPR006636 -
Seca4g12170 381 FunFam UV excision repair protein RAD23 homolog 150 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12170 Seca-Chr4 262505830 262513343 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12170 K10839 - gmx:100819019 615.92