Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12162 ATGGGGGGAGCCATAGGCATTGGCTTAGAGTGCTTGGCATGGTTGATATTTTACACCACAATCTTTGCCTCTCGCTGTGCTGCTCAACGACAACAAGAATACCTCAAGATGGTGGCCAACGCGACCGATTTTCCATTGGAAGATTACTACGATTACATCATCGTCGGTGGCGGCACCGCAGGGTGTCCACTGGCGGCGACGCTTTCTCAAGGGTTTAGGGTTCTTCTCCTTGAACGAGGAGGCATTGCTCACGGTAAGCCCAACTTGATGAACCAAGAAGGGTTCTTGACCACCCTATTGAACGCCAACGCCAACGATTTGGACTCTCCTGCGCAACCATTCATTTCTGAAGAAGGCGTTCCCAATGCTCGAGGCCGCGTTCTTGGCGGCAGCAGCGCCATCAATGCAGGCTTCTACAGCCGAGCCGATCCCGATTTCTTCACCAGGTCAGGGTTGACTTGGGACATGAGGCTCGTCAACGAATCTTACGAATGGGTTGAGAGGGAAATTGTGTTCACGCCACAGCTCAAGACTTGGCAATCCGCGGTTCGTGATGGCTTGTTAGAAGCAGGGGTTTCTCCTTACAATGGCTTCACTTTAGACCATGCATCTGGCACCAAGATTGGTGGTTCCACCTTTGACACCTCTGGCACAAGACACACTTCTGCTGATCTTTTGAGATATGCAAGACCTTCCAATCTCAAGGTCGCTATTCATGCTACTGTAGAGAGGCTGCTTCTTGCTTCTTCTTCTTCTTCTTCTTCTCAACCTTCTGCTATTGGCGTCCTTTACCGTGACCAAATGGGAAGGTATCACCATGCAATCTTAAAGGACCATGGTGAGGTTATTCTCTCTGCTGGTGCCATTGGAAGTCCTCAACTTCTTCTGCTTAGTGGGATTGGTCCTAGGCCTTATCTTTCTTCATGGGGGATTCCTGTTGCTCATCACCTTCCTTATGTGGGTCATTTCCTCTATGACAATCCTCGCAATGGAATCACTATTCTCCCTTCACTTCCACTTGAGCATTCACTCATACAAGTTGTGGGGATTACAGATTCTGGGGCTTACATTGAAGCAGCATCCAATGTGGTTCCTTTTGTATCCCCTCCTCAATCTGTCTTCATCCGAACCCCTTCTTCCCCTCTCTACCTCACTGTGGCTACCCTCATTTCCAAGATTTCAGGGCCAGTCTCCTCTGGTTTTCTTAGACTGGCTTCCACGGATGTTGGGTTTAATCCTATTGTGAGATTCAATTACTTCAACAACCCGGTTGATGTTGAACGCTGTGTGAATGGCACCAGAAAGATAGGGGATGTCTTGAGGAGCAGGGCATTGAATGATTTCAAATTCAGGAACTGGTTAGGGGGCAGAGAGTTTAGATTTATAGGACCTGCATTGCCTATGGACCAAACAGATTACCTTCAGATGGCTGATTTCTGCCGACGGACGGTGAGCACCATATGGCACTACCATGGAGGCTGTGTCGTTGGCAAGGTGGTTGATCCTCATCTTAAGGTCAGTGGGATTGATTCACTTCGTATTGTGGATGGGTCTGTGTTTAGTGTCTCACCAGGAACCAATCCTCAGGCCACCTTAATGATGCTAGGACGGTATTTCGGGCTCAAGATAATCAGAGAAAGAGAGAGATATAAATGA 1656 0.4849 MGGAIGIGLECLAWLIFYTTIFASRCAAQRQQEYLKMVANATDFPLEDYYDYIIVGGGTAGCPLAATLSQGFRVLLLERGGIAHGKPNLMNQEGFLTTLLNANANDLDSPAQPFISEEGVPNARGRVLGGSSAINAGFYSRADPDFFTRSGLTWDMRLVNESYEWVEREIVFTPQLKTWQSAVRDGLLEAGVSPYNGFTLDHASGTKIGGSTFDTSGTRHTSADLLRYARPSNLKVAIHATVERLLLASSSSSSSQPSAIGVLYRDQMGRYHHAILKDHGEVILSAGAIGSPQLLLLSGIGPRPYLSSWGIPVAHHLPYVGHFLYDNPRNGITILPSLPLEHSLIQVVGITDSGAYIEAASNVVPFVSPPQSVFIRTPSSPLYLTVATLISKISGPVSSGFLRLASTDVGFNPIVRFNYFNNPVDVERCVNGTRKIGDVLRSRALNDFKFRNWLGGREFRFIGPALPMDQTDYLQMADFCRRTVSTIWHYHGGCVVGKVVDPHLKVSGIDSLRIVDGSVFSVSPGTNPQATLMMLGRYFGLKIIRERERYK. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12162 551 ProSitePatterns GMC oxidoreductases signature 2. 287 301 IPR000172 GO:0016614|GO:0050660
Seca4g12162 551 Gene3D - 50 536 IPR036188 -
Seca4g12162 551 PIRSF Alcohol_oxidase 352 551 IPR012132 GO:0050660
Seca4g12162 551 PIRSF Alcohol_oxidase 25 361 IPR012132 GO:0050660
Seca4g12162 551 SUPERFAMILY FAD-linked reductases, C-terminal domain 324 493 - -
Seca4g12162 551 Pfam GMC oxidoreductase 50 327 IPR000172 GO:0016614|GO:0050660
Seca4g12162 551 Pfam GMC oxidoreductase 396 537 IPR007867 GO:0016614
Seca4g12162 551 Gene3D - 172 486 - -
Seca4g12162 551 SUPERFAMILY FAD/NAD(P)-binding domain 37 546 IPR036188 -
Seca4g12162 551 PANTHER OSJNBA0019K04.7 PROTEIN 16 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12162 Seca-Chr4 262403601 262405755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12162 7 551 Miscellaneous Gene Families AT5G51950 45.748 2.19e-154 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12162 K08248 - gmx:100820069 838.95