Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12089 ATGGCCACTCCCAATGAGACTGGGAATTTGATTGAGAGAGATACAGTAAAGAGACTTAAACATATGGGAAGGAAGCTGCTCAGAAACCTGCCTTCTGTTGATAAGCTTCTTGAACAGCTTGATAAACTGGAGCTGGTATTATCAACCTTAGATCAAGCACCAACCAAGCTAATTCAAGAATCACTTGTGCCTTCAATGAAAGCATTGATTTCTGATACTTTGTTGAGACACACAGACGAGGATGTTAAGGTTTCGGTTACATCTTGCTTCTCTGAGATTTCAAGAATTACAGCGCCAGATGCCCCATACGATGATGAACAAATGAAGGAAATTTTCAAGCTCACAGTGGCAGCTTTTGAGAAATTGTCACATGTATCTGGCCGTGGCTATGAAAAAGCACTCAATATACTTGATAATGTTTCAAAGGTCAGATTATTCTTGGTCATGCTGGACCTTGAATGTGATGACCTGATTATTGAGATGTTTCAGCATTTCTTGAGAACTATAAGGTCAAACCATCCCAGTAATGCAATTCGTTCAATGGAATCAATAATGACCCTTGTCTTGCTTGAAAGTGAAGAAATTTCCCCAGATCTTCTTAGACCTTTATTAGATAGTGTGAGAAAGGAAAACCAGACTATTTCACCTATTTCCTGGACCTTGGGGGAGAAAGTAATTAGCAACTGTGCCATTAAGCTTAAACCCCATCTCAAGATAGCAGTGGAATCCTCAGGCAGAGCTCTCAATGAGTATGCACAGATAGTAATTTCTATTTGCCAGAGTCAATCTGAATCCCCCCATTGTGATCATTCAATTGGTTCTAAGAAGACAGTGGTTAAGGAAGTTAATAACAAGCTTGATGACGATGTACCTAAAGATGCAGATGAACAACCTTGTGATGTGACCGAAGGGCTTGAACCGGGTATTACTTGTGTGAGAGATTCTCAAATTATGGATGATTCAAAATCAAATGTTAGAAGTGCAAATGCTACTACCACGGATGGTGAGGTTATAAAAAAGTCTGGTTCAAAAAGGAAACCACATTCTGTCCAGGAACCAAAATCAGAAACTTGGCTGAATACTGTGCCAAGGAAGAGGGGACGAAAGCCTAATTCCTTAATGAATGAAGAGGAAGGCTATGATAACTCTTGGATTTATGTGGGAACAAAATCTGCAAAACCAGCTCTATCTAGAAAGGCTCCCAATAGTAGCTCTGCTTTTCCACCTTCCGAAAATCCTACTTCGGGAAAGGATAAGTTGAAGCCAAATGCTAAAACTACAAGTGAAGTTCTTGTTTCTAAGCCAAACAATGAGAACATTGCAAAACCTGCTCAATCCAGAAAGACTCGCGATGTTGGCAGTGATTTTCCACCTTATGAAAAGCCTGCTTCCAGCAAGGATAATGTACTGTCAAAGCCTGAAGATATGAGGGAAGGTCATGAAACTTTAGTTGCTAAACCTAAAAATGATGAGAATACTGATGCTGTTCCTCCTTCTACAAACCATAACATTCCTGATGGAAGCCGCCCCAAAAGAGGTCGGCCAAGGAAAATAAGTAGCAGTGGGAATCAAGATGTTCAGCCTAATTCTGTGTCAATGTTAAAGGAAGGTGATATGAATCCTCTGCTTGAGAAGACTTCTTTGGAATCCCCTGGTGTTAGACTGGAAAAGGAATCTGAAGTAAAACCTCAGTCATCAATTAGGAAAATCAAATTTTCTGTAAAGTTTGATGGAAAAACTATGGAATCTGAGTTTTTTTGTAAAGATGAGGGGAATCACAAGTCAGCAATGAATATTGAGGTAGAAAATAGAGAAGAAGGCAGGTCCTCAGCTCAAACAGAAATTAAGAAGAAGAGGAGGCATAATGCTACTCCTGATAAAAGTCCCAACAAATCATCTGCAATGAAGGGTCTGATTACAGAGTCTGCAAATAAAACATTAAGTGGAATTGAGGAAACCGCACAGGCAGGGTTGAGGAGAAGGCGCGTCACTGTGAGTGGAGAGGTATGCATTTGA 2016 0.4018 MATPNETGNLIERDTVKRLKHMGRKLLRNLPSVDKLLEQLDKLELVLSTLDQAPTKLIQESLVPSMKALISDTLLRHTDEDVKVSVTSCFSEISRITAPDAPYDDEQMKEIFKLTVAAFEKLSHVSGRGYEKALNILDNVSKVRLFLVMLDLECDDLIIEMFQHFLRTIRSNHPSNAIRSMESIMTLVLLESEEISPDLLRPLLDSVRKENQTISPISWTLGEKVISNCAIKLKPHLKIAVESSGRALNEYAQIVISICQSQSESPHCDHSIGSKKTVVKEVNNKLDDDVPKDADEQPCDVTEGLEPGITCVRDSQIMDDSKSNVRSANATTTDGEVIKKSGSKRKPHSVQEPKSETWLNTVPRKRGRKPNSLMNEEEGYDNSWIYVGTKSAKPALSRKAPNSSSAFPPSENPTSGKDKLKPNAKTTSEVLVSKPNNENIAKPAQSRKTRDVGSDFPPYEKPASSKDNVLSKPEDMREGHETLVAKPKNDENTDAVPPSTNHNIPDGSRPKRGRPRKISSSGNQDVQPNSVSMLKEGDMNPLLEKTSLESPGVRLEKESEVKPQSSIRKIKFSVKFDGKTMESEFFCKDEGNHKSAMNIEVENREEGRSSAQTEIKKKRRHNATPDKSPNKSSAMKGLITESANKTLSGIEETAQAGLRRRRVTVSGEVCI. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12089 671 MobiDBLite consensus disorder prediction 467 488 - -
Seca4g12089 671 SUPERFAMILY ARM repeat 43 270 IPR016024 -
Seca4g12089 671 Pfam Sister chromatid cohesion protein PDS5 protein 34 237 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 517 534 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 359 375 - -
Seca4g12089 671 Coils Coil 33 53 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 550 565 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 598 621 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 316 337 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 627 651 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 395 565 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 316 376 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 598 671 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 396 443 - -
Seca4g12089 671 MobiDBLite consensus disorder prediction 338 352 - -
Seca4g12089 671 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 16 263 IPR039776 GO:0007064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12089 Seca-Chr4 261813613 261824106 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12089 - - aprc:113857095 785.793