Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12077 ATGTTTTGGAGGTTGCGATCTATGTTCGGTGGCGGGGGAAGGTGGCTGCGCTTCTCGGGGCGATTCAAGTTTGTTCAGACGACATCATTATGGAATGCCAGCAACCCCCAAAGCAGTTCCTTTTGCACTTCAGCGAAAAACAACAACAACATCGCCGAGGAAAGGTTGAAGCAATTGAAGCAGCTGGAAAATCTCGACATGATGACTGCCGCTAAGATGCTTTTCACTGAACCCCCAACCAAGAAAAAATTTGGGTTTGATTTCCATCTTGTACAATTTTTTTTTGCCTGCTTGCCTTCCTTGGCTGTGTATTTGGTGGCACAGTATGCTCGTTATGAAATGAGAAAAATGGAGGTGGTGAAAGAGAGACTTGAGAAACTTGAAGAGGCTGTGAAGGAGATTGTGGTTGAAACTAAGAAACAATCAAGCAGCAACCTAGCCACAGAACAGGTAACTGATAATGAGAAAAAACATCTAAATTCTTCTACATCAAAGGACACAAGTAGCAGTTCAGTATCAAATAAAGCTGCAGAGGAAGACCGTTCTAATAAGCATAATTTTCTCAAGTCAAAGCCAGAAATAGGTGAAGAGAGTAAAGGTTCAGTGGCAACTCCAAATTCTTCTCTTCTGGATCCGAAAGACCCTGCACCTTTGTGTTTGTGTTGTCCAATGGCACGCCTATTCCGTCTCCTAAGAAAAACCCTAACCCTAACCCTAACGCACCAAATTCACCATCAACGACAACAATTATGCATTTCTCCCCACCTCTTCCGAAGAACTTACATTTCAGACATGCGCAAAGAAGCTTTCGAAGGAAACATTTTGAGACTCCTCCGCAATGAGATTCAGTACGAGCTCCAATCCTCTCCTCCCAACAACCCTGTTACCAAGTTTGGTTCCTTTTTGGTGGATGGCAGACCTGGGGAGCGATGGATTACATTGAAAAGACAATTCGCAAATGAAGATATTAAAGTTGAAGTCACCATGTTTGATGGAGCTGTTCCTGCTCCAAGTGCAAGTGGTGGTGTAGCTAATTCGGATGAAATGCAACTGCACATTACCTTAATTGTTAACATCTCCAAGGGAGAAGGTGGGGTGCTGGAACTCATGTGCTCTGCTTGGCCAGACACTATAGAGATAAAAAGGCTGTTCATACGTAGAAATGAAAAGACCCATGCTGAACCCTATGCTGGTCCTGACTTCGAGGATTTGGATGATGAGTTGCAAGACAGCCTTTATGATTTCTTGGAAGTAAGGGGTATAAATGATGAACTTGCCATTTTCTTGCATCAGTACATGAAACATAAGGATAAAACAGAGTTCATAAAGTGGATGGAGAGAGTTAAATCTTTTATTGAAAGGAATTAA 1368 0.4262 MFWRLRSMFGGGGRWLRFSGRFKFVQTTSLWNASNPQSSSFCTSAKNNNNIAEERLKQLKQLENLDMMTAAKMLFTEPPTKKKFGFDFHLVQFFFACLPSLAVYLVAQYARYEMRKMEVVKERLEKLEEAVKEIVVETKKQSSSNLATEQVTDNEKKHLNSSTSKDTSSSSVSNKAAEEDRSNKHNFLKSKPEIGEESKGSVATPNSSLLDPKDPAPLCLCCPMARLFRLLRKTLTLTLTHQIHHQRQQLCISPHLFRRTYISDMRKEAFEGNILRLLRNEIQYELQSSPPNNPVTKFGSFLVDGRPGERWITLKRQFANEDIKVEVTMFDGAVPAPSASGGVANSDEMQLHITLIVNISKGEGGVLELMCSAWPDTIEIKRLFIRRNEKTHAEPYAGPDFEDLDDELQDSLYDFLEVRGINDELAIFLHQYMKHKDKTEFIKWMERVKSFIERN. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12077 455 MobiDBLite consensus disorder prediction 142 209 - -
Seca4g12077 455 Coils Coil 110 137 - -
Seca4g12077 455 FunFam Mitochondrial glycoprotein 270 452 - -
Seca4g12077 455 PANTHER COMPLEMENT COMPONENT 1 160 453 IPR003428 GO:0005759
Seca4g12077 455 SUPERFAMILY Mitochondrial glycoprotein MAM33-like 269 453 IPR036561 -
Seca4g12077 455 MobiDBLite consensus disorder prediction 177 196 - -
Seca4g12077 455 Pfam Mitochondrial glycoprotein 278 452 IPR003428 GO:0005759
Seca4g12077 455 Gene3D Mitochondrial glycoprotein 271 452 IPR036561 -
Seca4g12077 455 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12077 Seca-Chr4 261678884 261693733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12077 - K15414 spen:107012496 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12077 4 261678884 261693733 Seca4g12077 4 261678884 261693733 ECH