Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12070 ATGTCATCAGATTTGCATTTACCAGAAGAGTGCTGGGAACATATCTTCAGATTCCTCAAAGACCATCGTCACTTTGAGTCTCTCTCCCTCGTCTCCAACCAATTCCTCTCCATCACCAACCGTCTCCGATTCTCACTCACAATCCGCGACCCAACGCTCCCTTCCCTCCCTCGCCTCTTCCACAGGTTCCCCACTCTCACATCCCTCGACCTCACGCGCTTCCGCGGTGACCTCGACGCGCTTCTCCGCCAAATCTCTCGTTCCTCCTTGGACCTCAGATCGCTCAACCTCTCTCACCACTCCACCATCCCTGCAAATGGGTTGCGAACTTTGGCCCAAAAGATGAAAACTTTGACCTCTCTCACCTGCTCCTACATGGATTCTCTCAGTAACAATGACCTGCTCGTCATCGCCGATTGTTTCCCTTCCCTCGAAGAACTCGACCTTAGCTTCCCCAAAGACGTTTATTTCTCTAATTTTGGTGTAGAGGTTCTGTCTTTGGCGCTTCCCAAGCTCCGCAAGGTTAATCTCTCTGGTAATTTCTTCATCAACAACGCCTCTCTTTTCAGTCTTTGCAAGAACTGTGAGTTTCTCGAAGAGGTCATGATTTTAAGTTGCCATTTGATAACCCAACCTGGCATTACTTCTGCGATCTGCGAAAGACCCAGTTTGAGGTCTCTCTCCGTTAGTCACCTTGGGTGCGGGATGAAAAGAGGGAACTCTGAAAGGCCCTTTGTTACTTTACAATTCATTGGCTCTTTGGTGAGTTTGAAGAGCTTGACTTGTCTTGAATTGATGAGTTCCAGTATCTCGGATGAGTTGCTCTGTTCTGTTGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTCCAAGGTTGCTGCAACTATAGTTATGATGGAATTTTGTTGTTGTTGTCAAAGTGTAAATTTGTGCAACACTTGGATCTTCAAGATGCTGAGTTTCTGAATGATGAGCATGTTGCTGATCTGTCTGTTTATCTTAGTGATTTGAGATCTATAAATGTTAGTGGTTGTAGGATGCTCACTGGTTCATCCTTCTTTACACTCACTAGGAACTGTCCTTTGCTCAGTGAGATCAAAATGGAGGCAATAGATTTTAGGCAAAAGTGGGTACAGGATTCTAATTCTTTGATGGATTTTGTTGTGAACCCTCATGTGAGTTCTCTCTATTTGGCTAACAATTTATGGCTGAGGGATAAAAACATCAAAATGTTTGCTTCCATTTGCCCCAATTTGCAGCTGCTTGACTTGAGCTCTTACTGTTGTATATCTGAAGGTATTGTTGAAGTTTTAAGGATATGCTGTAATATTAGGCATTTGAGCCTAGCTGCTTGGTCAGGAGTGGAGCTACTTGGGTTGAACTTTGAAGTTCCCAAACTGGAGGTGCTGAACTTTTCAGGATCACAAATTGGTGATGAAGTACTCTTTGTGATCTCAAAATGTTGTTGTAGGCTACTGAAGCTGGACCTGGAATGTTGTTCTAGTGTCACAGCAGAGGGAGTGAGGAAAGTGGTAGAGAACTGCACACAACTGAGAGAGATAAATTTGCGGTCTTGTGCTAAATTCCTTTCCATTTCAAACAGGCTTCTTTTCTCTCTCACCATATATGATCCTACCATTCTACTCCTTCCTCAGCTATTATTGAGGTTTTCAAGGCTCAAAATCATAGACCTCAGTCACTTCAATGGTGAACTGGAAGGCTTGCCTCATCAAATTTCACAATCTGGGTTGGACCTTGATTTGCTTAATCTTTCCAACCAGAGAAAACTTCCAGTTGATGGGTTGAGAGAACTTGGTTCAAAGATGACAAACTTGAGAGTTTTGATCTGCTCAAACATTGGCTCTCTGCATGATAGCCATCTGGTAGTCATAGCTTATTGTTTCCCATTTCTTGAAGAGCTTGACATTAGCTTTCCATTGGATTCTCAAGCCTCTGATTTTGGGATACTAAGGCTGTCTTCCATGCTTGAGAATCTACGCAAGATTGATCTTTCTGGTAATCATTTAATCACTGATAAGTCCCTTTTCTCTCTATGCCAAAACTGTAGGTCAATGGAAGAAATTTCATTCTTCACCTGTTTTAAGATAACCCAAGTTGGCATTGCTTCTGCAATCCGTCTGAGACCAAATTTGACTTCCATTTCCTTTAACATTGAAAAGAAAAGAATACATGATTTGATTGATTCATTCAGGAGTTTGAAAAGATTAACTGCTATTGATTTGTCCAACTCTTTTATCTCGGATGAGTTTCTCTCTTCAGTTGCAGAGGGTGGTGGTCTTCTGCTGAAGAAGCTTATCCTCCAAGACTGCTGCAACTGCACATTTGCAGGAATCTCTCTTGTGTTATCCAAATGTCAAAATGTTCAATGCTTACATCTTCGGAAAGCTGACTTTCTAACAGATCAATGTATCAGAAAATTATCTGTATTTCTACTTAATTTAACATCTATAAACCTTAGTGGTTGTTACCAGCTGACCAATTCAACATTTTTCATACTCACAAGAAACTGTCCTATGCTCAGTGAGATCAAAATGGAGAGAACATATCTTGGGGTAGAAGGAGAGGAAGATTCCAATTCCATGCTGGATCATGTTGTCAACCTTCAAGTGAAAACAGTTTATCTGGGTGATAATGTTTTACTGAGTGATGCAAGTTTAATAAAATTTGCATCCATTTGCCCCAGTTTACAGCTTCTTGACTTAAACTCTTGTGAGGGAATCTCTGAAAAATGTATTGTTGAGGTTTTGAAGGGATGCTGTGAGATAAGGCATCTAAACCTGGCCTATACAGGAATGAAACTGTTGGAGATTGACTTTGAAGTTTCCCAACTAGAGGTGTTGAACTTGTCAGGGTCAAGAATTGAGGATGAAGCACTCTCAATAATCTCAAGGAGGTGTCATGGACTATTACTTCTTGACATCCAGAATTGCTGGTATGTTACAACAAAGGGGGTGAGGGAAGTAGTAGAAAACTGCAGAGCACTGAAAGAGTTAAATTTAAAGGATTGTAGTTTGGTGGATGATGATTTTGCTGCTGGGATAACGTTGTCAATGCCATCATTGAGAACAATAATCACACCATCTGGTGTTGGTGTATATTACTGA 3126 0.4165 MSSDLHLPEECWEHIFRFLKDHRHFESLSLVSNQFLSITNRLRFSLTIRDPTLPSLPRLFHRFPTLTSLDLTRFRGDLDALLRQISRSSLDLRSLNLSHHSTIPANGLRTLAQKMKTLTSLTCSYMDSLSNNDLLVIADCFPSLEELDLSFPKDVYFSNFGVEVLSLALPKLRKVNLSGNFFINNASLFSLCKNCEFLEEVMILSCHLITQPGITSAICERPSLRSLSVSHLGCGMKRGNSERPFVTLQFIGSLVSLKSLTCLELMSSSISDELLCSVAEEGLPLRKLVLQGCCNYSYDGILLLLSKCKFVQHLDLQDAEFLNDEHVADLSVYLSDLRSINVSGCRMLTGSSFFTLTRNCPLLSEIKMEAIDFRQKWVQDSNSLMDFVVNPHVSSLYLANNLWLRDKNIKMFASICPNLQLLDLSSYCCISEGIVEVLRICCNIRHLSLAAWSGVELLGLNFEVPKLEVLNFSGSQIGDEVLFVISKCCCRLLKLDLECCSSVTAEGVRKVVENCTQLREINLRSCAKFLSISNRLLFSLTIYDPTILLLPQLLLRFSRLKIIDLSHFNGELEGLPHQISQSGLDLDLLNLSNQRKLPVDGLRELGSKMTNLRVLICSNIGSLHDSHLVVIAYCFPFLEELDISFPLDSQASDFGILRLSSMLENLRKIDLSGNHLITDKSLFSLCQNCRSMEEISFFTCFKITQVGIASAIRLRPNLTSISFNIEKKRIHDLIDSFRSLKRLTAIDLSNSFISDEFLSSVAEGGGLLLKKLILQDCCNCTFAGISLVLSKCQNVQCLHLRKADFLTDQCIRKLSVFLLNLTSINLSGCYQLTNSTFFILTRNCPMLSEIKMERTYLGVEGEEDSNSMLDHVVNLQVKTVYLGDNVLLSDASLIKFASICPSLQLLDLNSCEGISEKCIVEVLKGCCEIRHLNLAYTGMKLLEIDFEVSQLEVLNLSGSRIEDEALSIISRRCHGLLLLDIQNCWYVTTKGVREVVENCRALKELNLKDCSLVDDDFAAGITLSMPSLRTIITPSGVGVYY. 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12070 1041 SUPERFAMILY RNI-like 583 835 - -
Seca4g12070 1041 SUPERFAMILY RNI-like 253 569 - -
Seca4g12070 1041 FunFam F-box/LRR-repeat protein 4 726 858 - -
Seca4g12070 1041 FunFam F-box/LRR-repeat protein 20 946 1033 - -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 942 1033 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 862 941 IPR032675 -
Seca4g12070 1041 SMART LRR_CC_2 874 899 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 689 714 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 792 817 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 89 114 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 973 998 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 740 764 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 663 688 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 416 440 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 948 972 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 515 543 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 999 1027 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 169 194 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 583 608 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 818 843 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 489 514 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 334 359 IPR006553 -
Seca4g12070 1041 SMART LRR_CC_2 900 925 IPR006553 -
Seca4g12070 1041 Pfam Leucine Rich repeat 665 686 IPR001611 GO:0005515
Seca4g12070 1041 SUPERFAMILY RNI-like 5 231 - -
Seca4g12070 1041 SUPERFAMILY RNI-like 772 1031 - -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 460 538 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 2 243 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 244 373 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 374 459 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 539 721 IPR032675 -
Seca4g12070 1041 Gene3D Ribonuclease Inhibitor 722 861 IPR032675 -
Seca4g12070 1041 PANTHER UNCHARACTERIZED 739 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12070 Seca-Chr4 261591740 261597111 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12070 K10268 - gmx:100811565 811.986