Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12067 ATGGCGCTCCTTCTCCGCATGAAAACCAGTACCAGAAGCCCTACATTGACAAATCCTTCTCTGCTCCACCACCACCTCTTCTCTACCTCCAACTCCGGCGGCGACGGCGACGGCGGCGAACAATCTCCTCCCGATTCCAACTCTCCCTTCTCTTCCCTTTTCAGAGATGTCAAGAGCAGTCTCAAACAGCAACCCTCCTCCCCCAAGTCAAACCCAAGTTCCTCCAGCTTTTCATCCCCCGCTTCCTCCAATTCCCAAAAAACTTCTATAGAAGAGATCATGAAGAACCTCTCTGAGTTCCGCCGCCGGACCTCCGTGCCGACGCCCGATGATCCGTCTTCTTCGCAGCAAATCTCGTTTCAGGAGATCTACAAGCGGAACGTGGCGCAGAAACCCGGCGAATCCGCCGGTCTGGTACCCGGAAAGCCCGGCCGCCAGATTCCTCTTGACAACATTCGGGAAAGCTTGCGGCAGATGGGCGATCAAACGGGCGCTGATCGAATGTCGTCGTCGGTGTTCATGGGCTCGTTGAGATCGAAGCCTTCGGATTCGGAGGTGATCGGCGGGATGAGTGCGTTGCCGGAGACGGTGTTCGGCAAGGAGATGAGGGAGAGGAAAGAGGGAGATGGTTCCTCGGCGGCGGCGATGAATATGAACTTTCTGATGACATACGGGCACCATGAATTGGGAGAGAAATTGAGGAAGTTGAGGCCCGTGGGAAAAGGAAAGGAGTGGTTTTCTCTTGGGGAGTTGAGTGATAGGTTGTTGAGGTTGAGGGAGATGGAGGAGAAGAAAGCTATGTCCAATCCCACAGGGGCCGTTACCATGGTATTGAGAGATGCCCTCTCACAAATGGGCGAAAATAAGGATGACAAATCAAAGAAAACTTCACCGCAGAGAATGGATATGTTGGGCCTGTTGGGTGGGACTCCAACCTACTTGATGAGGCCTCCTAAGGAGCAACTTGTTGAAAAGTTCTTTCATCCAGATAATATGTCCTCCGCAGAAAAGTTGAAAATTGAGCTCGCAAAGGTTAGAGATGAGTTTAAAATGTCAGAATCAGATTGTGGTTCTGCTCGTGTTCAAGTTGCACAACTCACAACTAAGATTAAGCACCTATCATCAGTTCTACACAAGAAGGATGTGCATTCTCGAAAAGGTCTGCTAGCAATGGTTCAGAGGAGAAAAAGATTACTGAAGTACCTGAGAAGAACCGACTGGGATTCCTATTGTTTTGTTATCTCTAAGCTAGGTCTACGTGATAATCCAGATCATAGTTATAGAGGTCGATCTGGTGTGATGACCAGTTGA 1311 0.5004 MALLLRMKTSTRSPTLTNPSLLHHHLFSTSNSGGDGDGGEQSPPDSNSPFSSLFRDVKSSLKQQPSSPKSNPSSSSFSSPASSNSQKTSIEEIMKNLSEFRRRTSVPTPDDPSSSQQISFQEIYKRNVAQKPGESAGLVPGKPGRQIPLDNIRESLRQMGDQTGADRMSSSVFMGSLRSKPSDSEVIGGMSALPETVFGKEMRERKEGDGSSAAAMNMNFLMTYGHHELGEKLRKLRPVGKGKEWFSLGELSDRLLRLREMEEKKAMSNPTGAVTMVLRDALSQMGENKDDKSKKTSPQRMDMLGLLGGTPTYLMRPPKEQLVEKFFHPDNMSSAEKLKIELAKVRDEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDVHSRKGLLAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPDHSYRGRSGVMTS. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12067 436 CDD Ribosomal_S15p_S13e 344 418 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca4g12067 436 Gene3D - 387 422 - -
Seca4g12067 436 SUPERFAMILY S15/NS1 RNA-binding domain 342 421 IPR009068 -
Seca4g12067 436 Pfam Ribosomal protein S15 344 420 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca4g12067 436 NCBIfam 30S ribosomal protein S15 343 420 IPR005290 GO:0003735|GO:0005840|GO:0006412
Seca4g12067 436 Gene3D - 338 385 - -
Seca4g12067 436 Hamap 30S ribosomal protein S15 [rpsO]. 332 421 IPR005290 GO:0003735|GO:0005840|GO:0006412
Seca4g12067 436 SMART Ribosomal_S15_2 342 420 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca4g12067 436 Coils Coil 335 355 - -
Seca4g12067 436 MobiDBLite consensus disorder prediction 8 88 - -
Seca4g12067 436 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 426 - -
Seca4g12067 436 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12067 Seca-Chr4 261571368 261576160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12067 - - pcin:129288156 407.912