Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12050 ATGGAATTGGAATTGGAATCTCTGACAATTGATTTAAATTTGATGGATTCCAATAATTGGAGACCTAATCAGAGTACTGAACCCACTGTGGACACAAGTGATTGGAGAACTCAACTGCAACCTGAGTCACGCCCAAGAATTGTCAACAAAATAATGGAGACGTTAAAAAAACACCTTCCTGTTTCCGGTCCTGAGGGGTTACTTGAACTTCGGAAGATTGCTCAAAGATTTGAAGAGAAGATTTTTACTGCTGCAACAAGCCAGTCTGATTATCTACGGAAAATATCTTTGAAGATGCTTACAATGGAGAATAAATCCCAAAGCACCATGGCTAACAATATACCATCAAATCAAGTTGGCTCTAGCAATAAACATCCCGATCAAGGACTTGTTTTGCAGCCTCAAGTTCATAATACAGGGCAGCAACATCCTATTCCTTTGCCTGGTCAGACCCAGCAACGTCAGCAACTTCTATCTCAGAACATTCAAAATAGCGTTGCACCTCAATCTAACCTTCCATCTGTATCTAGTCTAGCCCAGACTCCCAGCCAAAATATTGGCCAGAATTCCAACATACAGAATATACCTGGGCAAAATTCAATGGGTAGCACTATTGGCCAGACTTCAAACATACAAAATATGTTTCCTGGTTCTCAGAGACAAATGCCAGGAAGGCAGCAGGTTGTTCCCCAACAGCAACAGCAGCAATCACAGAATCCACAACAGTATCTTTACCAGCAGCAGATTTTGAAACACAAGCTCCAGCTACAATCTCAGATTCAGCAGCAACAACAGCAGAACCTTCTGCAACCAAATCAGTTGCAATCTTCTCAGCAATCTGTTATGCAAACTTCATCTGTTATGCAGCCTTCCATGATGCAAACATCTCTATCTAGCCTTCCACAGAATCAGCAGTCCAATAATGCTCAGCAATCAACACAGTCTATGCTTCAGCAACATTCCCAAGTTATCAGGCATCAGCAACAACAGACTTCTATGGCTCATCAGCAAGAAACACCAATGGCTCAACAGCCAATCTTGCCTGGACAACAGCAACAACAACAGATTATGGGGCCTAAGGCAAATGCAACAAGCATACAACAAGCTCAGATGCTTGGGGCACAGAATAATGTTGGTGACATACAGCAACCACAGAGGTTGCTTGCGCAGCAGAATAATCTTACAAACCTGCAACAGCGACAGCAACAGCAACAATTGATAAATCAGCAAAACAATCTAACAAATATACATCAACAACAGTTGGGAAATAATGTCCCTGGGTTACAACAACAACAGCTGCTTGGACCTGAATCTGGCAACCCAGGCATGCAAACAAGCCATCATTCTGCACACATATTACAACAACCAAAGGTTCCAATGCAGCAACAATCACAACAAAATGCATCAAATTTGTTACCATCTCATGCGCAACAGTCACAGCCACAGGCTTCACAGCAGAAATTAATGTCACAGACACAGATTCACACTCAGCCTGCACAGTTGCAACAACATTTGGGTTTGCAGCAGCAACAGTCAAACCCCTTGCAGCGAGACATGCAGCAAAAACTTCAAACATCAGGATCTTTACTTCAACAACAAAATGCTCTTGATCAACAAAAGCAGTTATATCAAACTCAAAGAGCTCTTCCAGAAACATCAACAACTTCTCTGGATTCTACAGCACAGACTGCACAACCAAGTGGGGCTGATTGGCAAGAAGAAGTGTACAAAAGGATCCAAACCATGAAAGAAAATTACTTCCCGGAGATGAATGAAATGTACCAGAAAGTCGCTAGTAGACTTCAGCAGCATGACTCTCTTCCCCAACAGACGAAGTCAGATCAGATTGAAAAGCTGAGGGTATGTAAAATAATGCTGGAGCGAATGATGACACTCGTGCAAGTTTCCAAGAAGAACATTTTGCCTAATCTCAAGGATAAATTGGGAACATTTGAGAAGCAGATTATACATTTCCTAAATACAAATAGGTCTAGGATACCATCAGGACAGCTTCCCCCTACTCATATGTCCTCCATGCCACAGCCACAATCCCAAGTTACTCAAGTACAGCCTCCTGAAAATCAAATAAACTCTCAGTTGCATCCATCAAATTTACAAGGTTCTGTAGCAACAACACAGCAGAATAATATTGCCAGCTTGCAGCACAATTCTATGTCTGGTGTATCAACAGCACAGCAGCAGAATATGACGAATTCAATGCAACCAGGTACTAATTTAGATTCTGGACAAGTAAATTCTGTGAATTCCCTGCAACAGGTTCCAGTGAGCTCCCTTCAACAAAACCTTGTTAGTACACCTCAACAGACTAACATCAATCCCTTACCATCGCAAGGTGGGGTAAATGTAATCCAACCAAATCTAAATACCCTTCAATCAGGTTCCAGTATGCTTCAACACCAACTGAAACATCAGCAGGAACAGCAAATGCTGCAGAGTCAACAATTCAAACAACAATATCAGCAGCGACAATTGATGCAGAGGCAGCAGATCCTACAGCAGCAGCAGCAGCAGCAGCAACAACTACACCAGCCAGCAAAGCAACAACTGTCTACACAATTGCAGACACACCAAATGCCTCAGCTTCACCAAATGAATGATATAAATGATATGAAAATGCGACAAGGAATGGGTGTTAAGCCAGGGGTCTTTCAGCAACATCTTACCTCAGGTCAACACTCAGCTTATTCTCATCAACAGTTGAAACAAGGGGGTCCATTTCCTGTGTCTTCACCCCAACTCCTTCAAGCTGCATCTCCACAGATTGCTCAACATTCATCTCCCCAGGTTGACCAACAAAATCATGTCCCATCTCTAACAAAAGTTGCAACTCCTCTGCAATCTTCTAATTCACCTTTTGTGGCCCCTACTCCTTCACCTCCCATGACCCCATCTCCTATGCCAGGAGATTCTGAGAAGTCCATTCCCGGTGTTTCATCAATATCAAATGCTGCAAATGTGGGACATCAACAAACAGGGGGTGCAGCAGCACCAGCTCAATCCCTTGCCATTGGGACTCCTGGGATATCAGCCTCTCCTTTATTGGCAGAATTCAGTGGTCCAGATGGTGCTCATGGTAATGCTTTATTAGCCACTTCTGGGATGTCAACTACAGAGCAGCCTCTTGAGCGCCTAATTAAAGCGGTGAAATCAATGTCAACTAAAACATTAACTGCAGCTGTCAATGATATTGGTTCAGTTGTCAGCATGAATGATAGGATAGCAGGATCAGCTCCAGGTAATGGATCCAGAGCAGCTGTTGGTGAGGATTTGGTTTCCATGACTAATTGTCGTCTTCAGGCTAGAAATCTTATTACTCAAGATGGTACCAATGGAATTAAGAGGATGAAGCGCTATGTCAGTGCTATAACCTTGAATGTTGTATCATCTGATGGTAGCATGAATGACAGTATCAAGCAGTTTACTGCTTCAGAGGCTCCTGATCTAGAGTCAACTGCAATATCTAATGTCAAGAGGCCAAAGATTGAGGTGCATCATGCCCTATTGGAAGAAATAAGGGAAATTAATAACAGACTTATTGACACAGTAGTAGACATAAGTGATGAAGATGTTGATCCAACTGCAGCTGCTGCTGCTGCTTCTGAAGGGGCAGAAGGAACAGTTGTCAAATGTTCTTTCACTCCCGTGGCTCTCTGTCCAGCCTTAAAATCCCAATATGCTTCAGCACAAATGTCACCTATTGAGCCCCTGCGTTTGCTGGTTCCATCAAATTATCCTAGTTCCTCTCCCATACTCCTAGACAAGTTTCCAGTTGAATCCAGTGGGGGGAATGAAGATCTTTCAGAGAAGGCAAAGTCAAGGTTTAGCATATCCTTACGTAGTTTATCACAGCCCATGTCCCTTGGTGAGATCGCAAGGACTTGGGATGTTTGTGCTCGCAGAGTTATTTCTGAGTATGCACAGAGGACTGGTGGAGGAACCTTCAGCTCTAAGTATGGAACTTGGGAGGATTGCTTGACCACTGCACAATGA 4011 0.4313 MELELESLTIDLNLMDSNNWRPNQSTEPTVDTSDWRTQLQPESRPRIVNKIMETLKKHLPVSGPEGLLELRKIAQRFEEKIFTAATSQSDYLRKISLKMLTMENKSQSTMANNIPSNQVGSSNKHPDQGLVLQPQVHNTGQQHPIPLPGQTQQRQQLLSQNIQNSVAPQSNLPSVSSLAQTPSQNIGQNSNIQNIPGQNSMGSTIGQTSNIQNMFPGSQRQMPGRQQVVPQQQQQQSQNPQQYLYQQQILKHKLQLQSQIQQQQQQNLLQPNQLQSSQQSVMQTSSVMQPSMMQTSLSSLPQNQQSNNAQQSTQSMLQQHSQVIRHQQQQTSMAHQQETPMAQQPILPGQQQQQQIMGPKANATSIQQAQMLGAQNNVGDIQQPQRLLAQQNNLTNLQQRQQQQQLINQQNNLTNIHQQQLGNNVPGLQQQQLLGPESGNPGMQTSHHSAHILQQPKVPMQQQSQQNASNLLPSHAQQSQPQASQQKLMSQTQIHTQPAQLQQHLGLQQQQSNPLQRDMQQKLQTSGSLLQQQNALDQQKQLYQTQRALPETSTTSLDSTAQTAQPSGADWQEEVYKRIQTMKENYFPEMNEMYQKVASRLQQHDSLPQQTKSDQIEKLRVCKIMLERMMTLVQVSKKNILPNLKDKLGTFEKQIIHFLNTNRSRIPSGQLPPTHMSSMPQPQSQVTQVQPPENQINSQLHPSNLQGSVATTQQNNIASLQHNSMSGVSTAQQQNMTNSMQPGTNLDSGQVNSVNSLQQVPVSSLQQNLVSTPQQTNINPLPSQGGVNVIQPNLNTLQSGSSMLQHQLKHQQEQQMLQSQQFKQQYQQRQLMQRQQILQQQQQQQQQLHQPAKQQLSTQLQTHQMPQLHQMNDINDMKMRQGMGVKPGVFQQHLTSGQHSAYSHQQLKQGGPFPVSSPQLLQAASPQIAQHSSPQVDQQNHVPSLTKVATPLQSSNSPFVAPTPSPPMTPSPMPGDSEKSIPGVSSISNAANVGHQQTGGAAAPAQSLAIGTPGISASPLLAEFSGPDGAHGNALLATSGMSTTEQPLERLIKAVKSMSTKTLTAAVNDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNLITQDGTNGIKRMKRYVSAITLNVVSSDGSMNDSIKQFTASEAPDLESTAISNVKRPKIEVHHALLEEIREINNRLIDTVVDISDEDVDPTAAAAAASEGAEGTVVKCSFTPVALCPALKSQYASAQMSPIEPLRLLVPSNYPSSSPILLDKFPVESSGGNEDLSEKAKSRFSISLRSLSQPMSLGEIARTWDVCARRVISEYAQRTGGGTFSSKYGTWEDCLTTAQ. 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12050 1336 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 898 1324 IPR044661 GO:0003713|GO:0031490
Seca4g12050 1336 MobiDBLite consensus disorder prediction 106 130 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 138 157 - -
Seca4g12050 1336 Gene3D Coactivator CBP, KIX domain 34 113 IPR036529 GO:0003712|GO:0006355
Seca4g12050 1336 SUPERFAMILY Kix domain of CBP (creb binding protein) 32 109 IPR036529 GO:0003712|GO:0006355
Seca4g12050 1336 MobiDBLite consensus disorder prediction 547 570 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 430 527 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 898 979 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 898 959 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 724 751 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 547 569 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 664 703 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 167 240 - -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 276 362 - -
Seca4g12050 1336 Pfam KIX domain 33 112 IPR036546 -
Seca4g12050 1336 MobiDBLite consensus disorder prediction 774 794 - -
Seca4g12050 1336 FunFam Mediator of RNA polymerase II transcription subunit 15a 34 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12050 Seca-Chr4 261354430 261365037 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12050 K14972 - gmx:100805336 1580.46