Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12041 ATGTCGAAGGAGGAAGTGTTCGTTGCCGCAATTGACCAAGGAACCAGCAGCACCAGGTTCATAATCTATGACAAATCGGCTCGCACTATTGGAAGTCACCAGATCGAGTTCACTCAGTTCTACCCGCAAGCAGGGTGGGTGGAGCATGATCCCATGGAGATCTTGGAGAGCGTGAAGGTGTGTATGGCTAAGGCGTTGGACAAGGCTACCGCTGATGGGTACAACGTCGATAAGGGATTGAAAGCCATTGGTCTCACCAATCAGAGAGAGACAACTGTCGTTTGGAGCAAATCCACCGGTGCTCCTCTTTGCAATGCTATTGTTTGGATGGATAATCGCACCACTTCTGTTTGCAGGAAACTGGAAAAGGAGTTATCCGGGGGTAAAAACCACTTTGTGGAGAGTTGTGGTTTGCCTATTAGCACATATTTTAGTGCTGTGAAACTTCTGTGGATGATGGAAAATGTGAATGATGTCAAGGAGGCCATTAAAAAAAAGGATGCCCTGTTTGGAACTGTAGACACTTGGTTGATATGGAATTTAACTGGTGGAGTGAAGGGAGGTTTGCATGTCACTGATGTTTCAAATGCATCCAGAACAATGCTGATGAATCTAAAAACCCTTGAATGGGATGCATCCACCTTAAAAACCCTTGGAATCCCTCCTGAAATTTTGCCTAAAATTATCAGTAATTCTGAAGTTATAGGAAATATTACTTCTGGATGGCCAATTGCAGATGTCCCTATCTCTGGATGTTTAGGGGATCAACATGCAGCTATGCTAGGACAAGCATGCCGTAAAGGGGAGGCTAAAAGCACTTATGGCACAGGTGCTTTCATACTAATAAATACTGGTGAAGGGATAGTTCGGTCAACACATGGTCTTCTATCCACTGTTGCCTTCAAGCTTGGACCAAAAGCTCCAACCAAATATGCACTGGAAGGATCAGTTGCTATTGCTGGAGCTGCAGTGCAGTGGCTTAGAGACAGTCTTGGGGTCATTTCTAGTGCTTCAGAGATTGAGGCTCTGGCATTACAGGTTGAATCCACTGGTGGGGTTTACTTTGTTCCTGCTTTCAATGGATTGTATGCCCCATGGTGGCGTGATGATGCTCGTGGGGTTTGCATTGGGATAACAAGGTTTACCAGCAAGGCTCACATTGCTCGAGCTGTGCTTGAGAGCATTTCTTTTCAAGTGAAAGATGTCTTGGATTCAATGCACAAAGATTGGGCAGAAAATGAATCCAAGAAAGAGTTTTTGCTTAGAGTGGATGGTGGGGCAGCTGCTAACAGCCTGTTGATGCAGATTCAGGTTTGGACTAATTTGCAGTTTTTATATGAAACTCTTTCTTTCATCTAA 1359 0.4467 MSKEEVFVAAIDQGTSSTRFIIYDKSARTIGSHQIEFTQFYPQAGWVEHDPMEILESVKVCMAKALDKATADGYNVDKGLKAIGLTNQRETTVVWSKSTGAPLCNAIVWMDNRTTSVCRKLEKELSGGKNHFVESCGLPISTYFSAVKLLWMMENVNDVKEAIKKKDALFGTVDTWLIWNLTGGVKGGLHVTDVSNASRTMLMNLKTLEWDASTLKTLGIPPEILPKIISNSEVIGNITSGWPIADVPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILINTGEGIVRSTHGLLSTVAFKLGPKAPTKYALEGSVAIAGAAVQWLRDSLGVISSASEIEALALQVESTGGVYFVPAFNGLYAPWWRDDARGVCIGITRFTSKAHIARAVLESISFQVKDVLDSMHKDWAENESKKEFLLRVDGGAAANSLLMQIQVWTNLQFLYETLSFI. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12041 452 PANTHER SUGAR KINASE 8 437 - -
Seca4g12041 452 Gene3D - 2 262 - -
Seca4g12041 452 SUPERFAMILY Actin-like ATPase domain 7 265 IPR043129 -
Seca4g12041 452 PIRSF GlpK 5 438 IPR000577 GO:0005975|GO:0016301
Seca4g12041 452 Pfam FGGY family of carbohydrate kinases, C-terminal domain 270 437 IPR018485 GO:0005975|GO:0016301
Seca4g12041 452 NCBIfam glycerol kinase GlpK 7 437 IPR005999 GO:0004370|GO:0006072
Seca4g12041 452 FunFam Glycerol kinase 5 263 - -
Seca4g12041 452 Pfam FGGY family of carbohydrate kinases, N-terminal domain 9 262 IPR018484 GO:0005975|GO:0016301
Seca4g12041 452 Gene3D - 264 438 - -
Seca4g12041 452 SUPERFAMILY Actin-like ATPase domain 265 437 IPR043129 -
Seca4g12041 452 ProSitePatterns FGGY family of carbohydrate kinases signature 1. 143 155 IPR018483 GO:0005975|GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12041 Seca-Chr4 261209827 261212776 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12041 K00864 - gmx:547750 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12041 4 261209827 261212776 Seca4g12041 4 261209827 261212776 ECH