Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12019 TATCCCTTTACCTATAATCTGCCTGTGATAGCGAAAACCAATGCAGCATTTGGAGAAGCTTTGGAGCCAGAGCAGGGGGAGCCTTTGAAGCACAGAAGGATTTTGTTATCTGACGTGGAGGTGAAGAGAGAAAGGAGTGTGTTCTTTGGGAGGAAATGGAATTCATTGGATGTTGGCACTGCTGGTATTGTGTTAGCCATGCATGTGCTTTCCCTTTTTGCACCATTCCAATTCAATTGGCCAGCTTTCTGGGTGGCAGTGTCTCTCTATGTTGTCACTGGCCTTTTTGGTATCACACTCTCTTTCCACAGAAACCTTTCTCACAGGAGTTTCAAGCTTCCCAAATGGCTTGAATATGCCTTTGCTTATTGTGGGGTTCTGGCTCTTCAGGGGAACCCAATTGATTGGGTGAGCACACATAGGTACCACCACCAATTCTGTGATTCTGATAAGGACCCTCATAGTCCCATTGAAGGATTCTGGTTCAGCCATATGAGTTGGCTCTTTGATACCAATTCTGTGATAGAAAGGTGTGGAGAGCCAAACAATGTTGGTGATTTAGAGAAACAACCCTTTTATAGATTTCTCAGAAGCTCTTACATTGTCCATCCATTTGCTTTGGGAGCTCTTCTATATGCCATAGGAGGATTTCCTTTCCTTGTTTGGGGAATGGGAGTGAGGATTATTTGGGTTTACCACATCACTTGGCTGGTAAATTCAGCTTGCCATGTATGGGGAAATCAGCCCTGGAACACCAGGGACTTATCCAGAAACAATTGGTGGGTGGCCATGCTTGCATTTGGTGAGGGTTGGCATAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGCCTAGAGTGGTGGCAACTAGACATGACTTGGTACGTAGTGAAATTTCTCCAAGCTATTGGATTGGCCACTGACGTGAAGGTACCAACTGAGAGTCAGAAGCAGAGAATGGCATTGAACAGTGATGGAATAGCCACATGA 993 0.4512 YPFTYNLPVIAKTNAAFGEALEPEQGEPLKHRRILLSDVEVKRERSVFFGRKWNSLDVGTAGIVLAMHVLSLFAPFQFNWPAFWVAVSLYVVTGLFGITLSFHRNLSHRSFKLPKWLEYAFAYCGVLALQGNPIDWVSTHRYHHQFCDSDKDPHSPIEGFWFSHMSWLFDTNSVIERCGEPNNVGDLEKQPFYRFLRSSYIVHPFALGALLYAIGGFPFLVWGMGVRIIWVYHITWLVNSACHVWGNQPWNTRDLSRNNWWVAMLAFGEGWHNNHHAFEYSARHGLEWWQLDMTWYVVKFLQAIGLATDVKVPTESQKQRMALNSDGIAT. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12019 330 CDD Delta9-FADS-like 79 311 IPR015876 GO:0016717
Seca4g12019 330 Pfam Fatty acid desaturase 80 298 IPR005804 GO:0006629
Seca4g12019 330 PRINTS Fatty acid desaturase family 1 signature 103 123 IPR015876 GO:0016717
Seca4g12019 330 PRINTS Fatty acid desaturase family 1 signature 140 169 IPR015876 GO:0016717
Seca4g12019 330 PRINTS Fatty acid desaturase family 1 signature 225 246 IPR015876 GO:0016717
Seca4g12019 330 PRINTS Fatty acid desaturase family 1 signature 268 282 IPR015876 GO:0016717
Seca4g12019 330 PANTHER ACYL-COA DESATURASE 31 324 IPR015876 GO:0016717
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12019 Seca-Chr4 261031474 261033421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12019 31 326 Lipid Metabolism Gene Families AT3G15850 78.114 1.10e-180 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12019 K20416 - gmx:100527024 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12019 4 261031474 261033421 Seca4g12019 4 261031474 261033421 ECH