Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12018 ATGAACCGCCTCCTCGCCTTCCTCTTCCATCAGGGTGTCTTGGATGAGCAATTCCTCCAGCTTCAACAGCTGCAGGATGACACCTCCCCAAACTTCGTCTCCGAAGTTGTCAACATTTATTTCCATGAATCCGAGAAGCTTCTCAGGAATCTCAGAGCATTGCTGACGGAGAGGGAGTTTTCGGACTATAAGAAAATGGGGATCCATTTGAATCAGTTCATGGGTAGCAGCTCCAGCATTGGCGCCAAAAGAGTCACAAATGTTTGCGTTGCCTTTCGTGCCGCTACTGAACAGAACAACCGTGCTGGATGCTTACGAGCCTTGGAAATGCTGGAGCATGAATACTGCTATCTCAAGAACAAATTGCACGAACTATTCCAAATTGAGCAGCAACGTGCTTTGGCAGCAGGAGTGAGGTACCCGGTGGTGCAGAATTAG 438 0.4863 MNRLLAFLFHQGVLDEQFLQLQQLQDDTSPNFVSEVVNIYFHESEKLLRNLRALLTEREFSDYKKMGIHLNQFMGSSSSIGAKRVTNVCVAFRAATEQNNRAGCLRALEMLEHEYCYLKNKLHELFQIEQQRALAAGVRYPVVQN. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12018 145 Gene3D HPT domain 1 144 IPR036641 GO:0000160
Seca4g12018 145 Pfam Hpt domain 35 104 IPR008207 GO:0000160
Seca4g12018 145 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 1 131 IPR045871 GO:0000160|GO:0009927|GO:0043424
Seca4g12018 145 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 29 125 IPR008207 GO:0000160
Seca4g12018 145 FunFam Histidine-containing phosphotransfer protein 1 1 141 - -
Seca4g12018 145 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 131 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12018 Seca-Chr4 261015720 261017385 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12018 K14490 - gmx:100789608 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12018 4 261015720 261017385 Seca4g12018 4 261015720 261017385 ECH
Seca4g12018 4 261015720 261017385 Seca4g08433 4 201328656 201330249 PCT