Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12014 ATGGAGAACGAACCACACACTGACGAGCTGGTATCAGTCGAGCTCCAAGCTCCTCCTGCTTGGAAGAAACTGCAGTTCTTCCCTAAGAAAGCAGGAACACCGAAAAAAAGTGAGATCATATTCATTGCTCCAACTGGGGAAGAGATCAGTTCCAGAAAACAATTGGAGCAGTACCTAAAGGCACATCCTGGGAATCCTGCGATATCAGAGTTTGACTGGGGAACTGGTGAGACCCCTAGGCGATCAGCAAGGATTAGTGAGAAGGTCAAATCAACTCCACCATCAGAGACCGAGCCTCCAAAGAAACGAACTCGAAAATCATCAGGTTCAAAGAAGGATAACAAAGAATCAGAATCTGCTTCAGAGGAAGGCAATGCAAAATCTGCTGCTGAGGAACTCAAGGCTGATCTGAATGAGACTGATGATAATAACAATGATAAAACAAGGAATGATACAGAGGAAATTAAGCACAGTGATGTCGAAGGGGAAAATGTGACTGCTGATAACAATAACAATGATACGGAGGAAATTAAGCATAGTAATGTGGAAGGGGAAAATGTGACTGCTGATAACAATAACAATGATACAGAGGAAATTAAGCATAGTAATGTGGAAGGAGAAAATGTGATTGCTGAAATGGCTCAAGGGGAAGAGGCATTGTTAGCAGAATCAGGGGAGAAATTTGCTGAGGATGCTTTGAATGCTGTGGTCATTGAAAATCCCGAAGGGGAGGCACCTATTGAATCAGAAAAGGAAAATGGTACCAAGCAGGATGAATCAGGTACTGTGATTCTTGAGGTAAATGGAGGAGCTGAGAAAGTGAATCCCAGTGTTGAAGATATTAATGCTAGGAATGAAATCCCAGTAAGTGATGGAAATAGCACCATTCAAGCTGAGGAGCAAGTCAAGAAAATGGTTGACAATGGACAAGTTATTTGGAGCTGTGCTCAATGA 954 0.4256 MENEPHTDELVSVELQAPPAWKKLQFFPKKAGTPKKSEIIFIAPTGEEISSRKQLEQYLKAHPGNPAISEFDWGTGETPRRSARISEKVKSTPPSETEPPKKRTRKSSGSKKDNKESESASEEGNAKSAAEELKADLNETDDNNNDKTRNDTEEIKHSDVEGENVTADNNNNDTEEIKHSNVEGENVTADNNNNDTEEIKHSNVEGENVIAEMAQGEEALLAESGEKFAEDALNAVVIENPEGEAPIESEKENGTKQDESGTVILEVNGGAEKVNPSVEDINARNEIPVSDGNSTIQAEEQVKKMVDNGQVIWSCAQ. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12014 317 SUPERFAMILY DNA-binding domain 7 104 IPR016177 GO:0003677
Seca4g12014 317 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 7 78 IPR001739 GO:0003677
Seca4g12014 317 MobiDBLite consensus disorder prediction 63 205 - -
Seca4g12014 317 Gene3D - 2 132 - -
Seca4g12014 317 MobiDBLite consensus disorder prediction 94 163 - -
Seca4g12014 317 Coils Coil 130 150 - -
Seca4g12014 317 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 285 IPR039622 -
Seca4g12014 317 Pfam Methyl-CpG binding domain 15 77 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12014 Seca-Chr4 260967513 260970234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12014 - - aprc:113854037 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12014 4 260967513 260970234 Seca4g12014 4 260967513 260970234 ECH