Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12007 ATGGCTTTGGCACGTTTGGCATTGAGAAATTTGCAGCAAAGGGTGTCTGCTTCCTTGATAGGCCAGGGTGGTGTGCAGAAGCAGAGGTGGGGTAATAATGAGTTGGTGGCAAGGTTTGCAACTGCAGCCGGTGATAAGGGGAAATCTGAAGGCAGTGAAGTTGCTGTCTCGGAAGGTAAAAAGTCAAGGTTGTTCCCAAGGAGGAGGGGCAGAAGATTGCCTTGGAGAAGCGATGACCGTGACTTCCCTCCTACACTTTATGAGTTCTTTCCATCAGGCCTTGGGAATGCATTGATGCAGGCAACTGAGAACATCAACAGGCTATTTGAGAATATGAATCTGACACCGTGGTCTTTCAGTGGGCGTGTGAAAGAGAAGGATGACCACTACAAACTGAGTTATGACATGCCAGGGGTTGCCAAAGAGGATGTGAAGATTACCATTGGAGATGGGGTCTTGACAATAAAAGGGGAGCACAAGGAAGAGAAAGAAGAAGGGGAGGATGATGAGTATTGGTCATCAAGTAGCTATGGCTACTACAACACTAGCCTTGTTTTGCCTGATGATGCTAAGGCTGATGAAATTAAGGCAGAGTTGAAGGATGGTGTCCTAACAGTAACCATTCCTAGGACTGAGAAGCCCAAGAAGGATGTGAAACAAGTGACTGTACAATGA 675 0.4681 MALARLALRNLQQRVSASLIGQGGVQKQRWGNNELVARFATAAGDKGKSEGSEVAVSEGKKSRLFPRRRGRRLPWRSDDRDFPPTLYEFFPSGLGNALMQATENINRLFENMNLTPWSFSGRVKEKDDHYKLSYDMPGVAKEDVKITIGDGVLTIKGEHKEEKEEGEDDEYWSSSSYGYYNTSLVLPDDAKADEIKAELKDGVLTVTIPRTEKPKKDVKQVTVQ. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12007 224 Gene3D - 91 224 IPR008978 -
Seca4g12007 224 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 24 224 IPR044587 GO:0009408
Seca4g12007 224 CDD ACD_sHsps-like 123 210 - -
Seca4g12007 224 SUPERFAMILY HSP20-like chaperones 108 223 IPR008978 -
Seca4g12007 224 Pfam Hsp20/alpha crystallin family 123 224 IPR002068 -
Seca4g12007 224 FunFam 26.5 kDa heat shock protein, mitochondrial 87 223 - -
Seca4g12007 224 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 108 224 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12007 Seca-Chr4 260878141 260879603 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12007 K13993 - gmx:100787482 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12007 4 260878141 260879603 Seca4g12007 4 260878141 260879603 ECH